Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
PTP4A1Q93096 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.31■□□□□ 0.04
PTP4A1Q93096 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.31■□□□□ 0.04
PTP4A1Q93096 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTP4A1Q93096 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
PTP4A1Q93096 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PTP4A1Q93096 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTP4A1Q93096 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.3■□□□□ 0.04
PTP4A1Q93096 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PTP4A1Q93096 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PTP4A1Q93096 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTP4A1Q93096 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTP4A1Q93096 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTP4A1Q93096 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTP4A1Q93096 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
PTP4A1Q93096 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTP4A1Q93096 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTP4A1Q93096 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTP4A1Q93096 TUBB8P12-201ENST00000308911 1335 ntBASIC15.3■□□□□ 0.04
PTP4A1Q93096 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
PTP4A1Q93096 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTP4A1Q93096 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PTP4A1Q93096 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PTP4A1Q93096 TUBB7P-202ENST00000428444 1305 ntBASIC15.3■□□□□ 0.04
PTP4A1Q93096 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC15.3■□□□□ 0.04
PTP4A1Q93096 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC15.3■□□□□ 0.04
PTP4A1Q93096 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PTP4A1Q93096 PMPCAP1-201ENST00000508114 1576 ntBASIC15.3■□□□□ 0.04
PTP4A1Q93096 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
PTP4A1Q93096 ABR-204ENST00000543210 1049 ntTSL 2 BASIC15.3■□□□□ 0.04
PTP4A1Q93096 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.3■□□□□ 0.04
PTP4A1Q93096 TUBB8P7-204ENST00000567960 1332 ntBASIC15.3■□□□□ 0.04
PTP4A1Q93096 ABR-217ENST00000572441 563 ntTSL 4 BASIC15.3■□□□□ 0.04
PTP4A1Q93096 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PTP4A1Q93096 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC15.3■□□□□ 0.04
PTP4A1Q93096 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTP4A1Q93096 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
PTP4A1Q93096 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
PTP4A1Q93096 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTP4A1Q93096 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
PTP4A1Q93096 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 INTS4P1-201ENST00000438455 1935 ntBASIC15.29■□□□□ 0.04
PTP4A1Q93096 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 AC233702.3-201ENST00000578656 1387 ntBASIC15.29■□□□□ 0.04
PTP4A1Q93096 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 PPIH-202ENST00000372549 327 ntTSL 3 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 UPK3BP1-201ENST00000428678 509 ntBASIC15.29■□□□□ 0.04
PTP4A1Q93096 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 AP002490.2-201ENST00000524791 560 ntBASIC15.29■□□□□ 0.04
PTP4A1Q93096 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 DUX4L17-201ENST00000557360 1267 ntBASIC15.29■□□□□ 0.04
PTP4A1Q93096 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 TPSP2-201ENST00000561760 610 ntBASIC15.29■□□□□ 0.04
PTP4A1Q93096 MPI-205ENST00000562606 1052 ntTSL 3 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 AC092329.2-201ENST00000598402 547 ntBASIC15.29■□□□□ 0.04
PTP4A1Q93096 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 AC093458.2-201ENST00000623150 629 ntBASIC15.29■□□□□ 0.04
PTP4A1Q93096 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.29■□□□□ 0.04
PTP4A1Q93096 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.29■□□□□ 0.04
PTP4A1Q93096 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 ALOX12P2-203ENST00000570921 1945 ntBASIC15.29■□□□□ 0.04
PTP4A1Q93096 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PTP4A1Q93096 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms