Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20■□□□□ 0.79
SMC1BQ8NDV3 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
SMC1BQ8NDV3 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMC1BQ8NDV3 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 ELK1P1-201ENST00000485699 580 ntBASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 PPA1-206ENST00000625364 644 ntTSL 5 BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC19.99■□□□□ 0.79
SMC1BQ8NDV3 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 MEP1AP4-201ENST00000423244 1087 ntBASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 RPS24-214ENST00000613865 538 ntTSL 5 BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMC1BQ8NDV3 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 ANO7L1-203ENST00000602586 1720 ntBASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 RN7SL618P-201ENST00000477850 296 ntBASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 AC073389.1-201ENST00000595595 795 ntBASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 AP000974.1-201ENST00000623909 2387 ntBASIC19.97■□□□□ 0.79
SMC1BQ8NDV3 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SMC1BQ8NDV3 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms