Protein–RNA interactions for Protein: Q5UIP0

RIF1, Telomere-associated protein RIF1, humanhuman

Known RBP Predictions only

Length 2,472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1Q5UIP0 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RIF1Q5UIP0 NOC2LP1-202ENST00000452600 2235 ntBASIC16.29■□□□□ 0.2
RIF1Q5UIP0 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC16.29■□□□□ 0.2
RIF1Q5UIP0 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.29■□□□□ 0.2
RIF1Q5UIP0 NEU3-202ENST00000526068 431 ntTSL 2 BASIC16.29■□□□□ 0.2
RIF1Q5UIP0 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RIF1Q5UIP0 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC16.29■□□□□ 0.2
RIF1Q5UIP0 AC092337.1-201ENST00000568699 1129 ntBASIC16.29■□□□□ 0.2
RIF1Q5UIP0 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RIF1Q5UIP0 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.29■□□□□ 0.2
RIF1Q5UIP0 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 GGCT-203ENST00000409144 836 ntTSL 2 BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 AC105129.2-201ENST00000559536 390 ntBASIC16.28■□□□□ 0.2
RIF1Q5UIP0 AL022328.3-201ENST00000607943 679 ntBASIC16.28■□□□□ 0.2
RIF1Q5UIP0 AL022328.1-201ENST00000610050 478 ntBASIC16.28■□□□□ 0.2
RIF1Q5UIP0 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 TMEM198B-204ENST00000484016 896 ntBASIC16.28■□□□□ 0.2
RIF1Q5UIP0 AC023310.3-201ENST00000557027 670 ntBASIC16.28■□□□□ 0.2
RIF1Q5UIP0 AC100756.1-201ENST00000562736 682 ntBASIC16.28■□□□□ 0.2
RIF1Q5UIP0 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 AC138749.3-201ENST00000567691 622 ntBASIC16.28■□□□□ 0.2
RIF1Q5UIP0 AC105021.1-202ENST00000570572 669 ntBASIC16.28■□□□□ 0.2
RIF1Q5UIP0 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 AL365330.1-201ENST00000607459 531 ntBASIC16.28■□□□□ 0.2
RIF1Q5UIP0 AC116165.1-201ENST00000611806 668 ntBASIC16.28■□□□□ 0.2
RIF1Q5UIP0 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 SLC22A20-204ENST00000530038 1673 ntBASIC16.28■□□□□ 0.2
RIF1Q5UIP0 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RIF1Q5UIP0 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.27■□□□□ 0.2
RIF1Q5UIP0 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RIF1Q5UIP0 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RIF1Q5UIP0 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RIF1Q5UIP0 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RIF1Q5UIP0 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.27■□□□□ 0.2
RIF1Q5UIP0 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.27■□□□□ 0.2
RIF1Q5UIP0 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RIF1Q5UIP0 RPL13AP20-201ENST00000459725 609 ntBASIC16.27■□□□□ 0.2
RIF1Q5UIP0 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC16.27■□□□□ 0.2
RIF1Q5UIP0 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
RIF1Q5UIP0 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RIF1Q5UIP0 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
RIF1Q5UIP0 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RIF1Q5UIP0 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RIF1Q5UIP0 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RIF1Q5UIP0 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RIF1Q5UIP0 KRT8P12-202ENST00000472924 1397 ntBASIC16.27■□□□□ 0.2
RIF1Q5UIP0 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RIF1Q5UIP0 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC16.27■□□□□ 0.2
RIF1Q5UIP0 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.27■□□□□ 0.19
RIF1Q5UIP0 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
RIF1Q5UIP0 SLC25A24P2-201ENST00000415059 510 ntBASIC16.27■□□□□ 0.19
RIF1Q5UIP0 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC16.27■□□□□ 0.19
RIF1Q5UIP0 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RIF1Q5UIP0 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.27■□□□□ 0.19
RIF1Q5UIP0 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
RIF1Q5UIP0 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC16.27■□□□□ 0.19
RIF1Q5UIP0 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC16.27■□□□□ 0.19
RIF1Q5UIP0 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.27■□□□□ 0.19
RIF1Q5UIP0 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
RIF1Q5UIP0 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RIF1Q5UIP0 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
RIF1Q5UIP0 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.19
RIF1Q5UIP0 KRT8P19-201ENST00000551916 1455 ntBASIC16.27■□□□□ 0.19
RIF1Q5UIP0 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
RIF1Q5UIP0 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.27■□□□□ 0.19
RIF1Q5UIP0 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RIF1Q5UIP0 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.19
RIF1Q5UIP0 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RIF1Q5UIP0 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RIF1Q5UIP0 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
RIF1Q5UIP0 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
RIF1Q5UIP0 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
RIF1Q5UIP0 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RIF1Q5UIP0 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RIF1Q5UIP0 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC16.26■□□□□ 0.19
RIF1Q5UIP0 SDHAP3-202ENST00000515467 728 ntBASIC16.26■□□□□ 0.19
RIF1Q5UIP0 AP000812.2-201ENST00000538934 718 ntBASIC16.26■□□□□ 0.19
RIF1Q5UIP0 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.26■□□□□ 0.19
RIF1Q5UIP0 AC009542.2-202ENST00000619004 1067 ntBASIC16.26■□□□□ 0.19
RIF1Q5UIP0 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms