Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC002056.1-201ENST00000395613 760 ntBASIC17.28■□□□□ 0.36
USP39Q53GS9 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
USP39Q53GS9 PAWRP1-201ENST00000451083 565 ntBASIC17.28■□□□□ 0.36
USP39Q53GS9 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.28■□□□□ 0.36
USP39Q53GS9 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.28■□□□□ 0.36
USP39Q53GS9 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.28■□□□□ 0.36
USP39Q53GS9 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.28■□□□□ 0.36
USP39Q53GS9 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.28■□□□□ 0.36
USP39Q53GS9 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
USP39Q53GS9 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.28■□□□□ 0.36
USP39Q53GS9 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
USP39Q53GS9 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 AL645608.8-201ENST00000606034 2086 ntBASIC17.28■□□□□ 0.36
USP39Q53GS9 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.28■□□□□ 0.36
USP39Q53GS9 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.28■□□□□ 0.36
USP39Q53GS9 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP39Q53GS9 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP39Q53GS9 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP39Q53GS9 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.27■□□□□ 0.36
USP39Q53GS9 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP39Q53GS9 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP39Q53GS9 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP39Q53GS9 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP39Q53GS9 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP39Q53GS9 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP39Q53GS9 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
USP39Q53GS9 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP39Q53GS9 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP39Q53GS9 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP39Q53GS9 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP39Q53GS9 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP39Q53GS9 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP39Q53GS9 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.27■□□□□ 0.36
USP39Q53GS9 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.27■□□□□ 0.36
USP39Q53GS9 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
USP39Q53GS9 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.27■□□□□ 0.36
USP39Q53GS9 AC109322.1-201ENST00000524499 1264 ntBASIC17.27■□□□□ 0.36
USP39Q53GS9 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP39Q53GS9 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP39Q53GS9 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
USP39Q53GS9 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.27■□□□□ 0.36
USP39Q53GS9 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.27■□□□□ 0.36
USP39Q53GS9 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP39Q53GS9 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP39Q53GS9 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP39Q53GS9 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
USP39Q53GS9 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP39Q53GS9 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP39Q53GS9 PP12613-201ENST00000424958 2230 ntBASIC17.27■□□□□ 0.35
USP39Q53GS9 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.27■□□□□ 0.35
USP39Q53GS9 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.27■□□□□ 0.35
USP39Q53GS9 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.26■□□□□ 0.35
USP39Q53GS9 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.26■□□□□ 0.35
USP39Q53GS9 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
USP39Q53GS9 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP39Q53GS9 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP39Q53GS9 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.26■□□□□ 0.35
USP39Q53GS9 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP39Q53GS9 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP39Q53GS9 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP39Q53GS9 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP39Q53GS9 AC139713.2-201ENST00000641328 2723 ntBASIC17.26■□□□□ 0.35
USP39Q53GS9 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.26■□□□□ 0.35
USP39Q53GS9 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP39Q53GS9 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.26■□□□□ 0.35
USP39Q53GS9 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP39Q53GS9 FAM86C2P-203ENST00000528684 1004 ntBASIC17.26■□□□□ 0.35
USP39Q53GS9 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
USP39Q53GS9 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP39Q53GS9 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
USP39Q53GS9 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
USP39Q53GS9 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.26■□□□□ 0.35
USP39Q53GS9 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP39Q53GS9 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP39Q53GS9 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP39Q53GS9 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.26■□□□□ 0.35
USP39Q53GS9 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP39Q53GS9 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP39Q53GS9 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP39Q53GS9 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP39Q53GS9 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP39Q53GS9 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP39Q53GS9 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
USP39Q53GS9 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP39Q53GS9 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
USP39Q53GS9 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.25■□□□□ 0.35
USP39Q53GS9 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
USP39Q53GS9 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms