Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TP73-AS1-207ENST00000624167 988 ntBASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 AC067930.6-201ENST00000623257 4947 ntBASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
PDLIM3Q53GG5 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 LYSMD4-203ENST00000378904 2122 ntBASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 FAM197Y8-203ENST00000450145 560 ntBASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 ABR-204ENST00000543210 1049 ntTSL 2 BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 NAA38-203ENST00000575071 553 ntTSL 2 BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 AC010327.4-202ENST00000591484 748 ntBASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 REXO1L6P-202ENST00000619970 1078 ntBASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 WDR6-223ENST00000627177 207 ntTSL 2 BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
PDLIM3Q53GG5 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 MED22-202ENST00000371999 987 ntTSL 3 BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 AC099336.1-202ENST00000602961 463 ntBASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM3Q53GG5 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms