Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDH1Q08174 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCDH1Q08174 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.41■□□□□ 0.22
PCDH1Q08174 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.41■□□□□ 0.22
PCDH1Q08174 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PCDH1Q08174 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
PCDH1Q08174 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
PCDH1Q08174 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.4■□□□□ 0.22
PCDH1Q08174 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.4■□□□□ 0.22
PCDH1Q08174 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
PCDH1Q08174 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.4■□□□□ 0.22
PCDH1Q08174 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.4■□□□□ 0.22
PCDH1Q08174 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.4■□□□□ 0.22
PCDH1Q08174 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.4■□□□□ 0.22
PCDH1Q08174 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.4■□□□□ 0.22
PCDH1Q08174 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.4■□□□□ 0.22
PCDH1Q08174 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.4■□□□□ 0.22
PCDH1Q08174 AC006557.2-201ENST00000592985 1240 ntBASIC16.4■□□□□ 0.22
PCDH1Q08174 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PCDH1Q08174 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 AC012313.10-201ENST00000623509 926 ntBASIC16.4■□□□□ 0.22
PCDH1Q08174 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.4■□□□□ 0.22
PCDH1Q08174 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PCDH1Q08174 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PCDH1Q08174 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PCDH1Q08174 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.4■□□□□ 0.22
PCDH1Q08174 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 AL645728.1-201ENST00000366221 2101 ntBASIC16.4■□□□□ 0.22
PCDH1Q08174 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.4■□□□□ 0.22
PCDH1Q08174 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
PCDH1Q08174 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
PCDH1Q08174 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCDH1Q08174 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
PCDH1Q08174 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.39■□□□□ 0.22
PCDH1Q08174 FER1L4-210ENST00000615531 5998 ntBASIC16.39■□□□□ 0.22
PCDH1Q08174 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
PCDH1Q08174 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
PCDH1Q08174 TOP3BP1-201ENST00000420768 1380 ntBASIC16.39■□□□□ 0.21
PCDH1Q08174 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH1Q08174 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH1Q08174 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
PCDH1Q08174 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.39■□□□□ 0.21
PCDH1Q08174 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH1Q08174 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.39■□□□□ 0.21
PCDH1Q08174 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH1Q08174 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH1Q08174 AL118508.1-201ENST00000613502 2345 ntBASIC16.39■□□□□ 0.21
PCDH1Q08174 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH1Q08174 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH1Q08174 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH1Q08174 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.39■□□□□ 0.21
PCDH1Q08174 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
PCDH1Q08174 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.39■□□□□ 0.21
PCDH1Q08174 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
PCDH1Q08174 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH1Q08174 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH1Q08174 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.39■□□□□ 0.21
PCDH1Q08174 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH1Q08174 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH1Q08174 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
PCDH1Q08174 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH1Q08174 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.39■□□□□ 0.21
PCDH1Q08174 FLJ38576-201ENST00000623820 2459 ntBASIC16.39■□□□□ 0.21
PCDH1Q08174 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCDH1Q08174 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
PCDH1Q08174 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH1Q08174 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.38■□□□□ 0.21
PCDH1Q08174 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH1Q08174 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.38■□□□□ 0.21
PCDH1Q08174 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH1Q08174 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.38■□□□□ 0.21
PCDH1Q08174 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH1Q08174 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH1Q08174 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH1Q08174 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH1Q08174 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH1Q08174 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
PCDH1Q08174 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.38■□□□□ 0.21
PCDH1Q08174 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH1Q08174 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH1Q08174 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.38■□□□□ 0.21
PCDH1Q08174 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDH1Q08174 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms