Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC11.99□□□□□ -0.49
CKS1BP61024 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC11.99□□□□□ -0.49
CKS1BP61024 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
CKS1BP61024 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
CKS1BP61024 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
CKS1BP61024 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
CKS1BP61024 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 AC007686.3-201ENST00000619017 3487 ntBASIC11.99□□□□□ -0.49
CKS1BP61024 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
CKS1BP61024 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 CCR12P-201ENST00000446203 998 ntBASIC11.99□□□□□ -0.49
CKS1BP61024 TSPY17P-201ENST00000450329 467 ntBASIC11.99□□□□□ -0.49
CKS1BP61024 FDX2-206ENST00000492239 773 ntTSL 2 BASIC11.99□□□□□ -0.49
CKS1BP61024 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC11.99□□□□□ -0.49
CKS1BP61024 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC11.99□□□□□ -0.49
CKS1BP61024 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC11.99□□□□□ -0.49
CKS1BP61024 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC11.99□□□□□ -0.49
CKS1BP61024 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC11.99□□□□□ -0.49
CKS1BP61024 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 AL138688.1-201ENST00000624851 1594 ntBASIC11.99□□□□□ -0.49
CKS1BP61024 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC11.99□□□□□ -0.49
CKS1BP61024 AC133963.1-201ENST00000504166 1679 ntBASIC11.99□□□□□ -0.49
CKS1BP61024 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC11.99□□□□□ -0.49
CKS1BP61024 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC11.99□□□□□ -0.49
CKS1BP61024 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
CKS1BP61024 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC11.99□□□□□ -0.49
CKS1BP61024 PAUPAR-201ENST00000630360 2965 ntBASIC11.99□□□□□ -0.49
CKS1BP61024 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
CKS1BP61024 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC11.99□□□□□ -0.49
CKS1BP61024 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
CKS1BP61024 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC11.98□□□□□ -0.49
CKS1BP61024 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC11.98□□□□□ -0.49
CKS1BP61024 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC11.98□□□□□ -0.49
CKS1BP61024 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC11.98□□□□□ -0.49
CKS1BP61024 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC11.98□□□□□ -0.49
CKS1BP61024 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC11.98□□□□□ -0.49
CKS1BP61024 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC11.98□□□□□ -0.49
CKS1BP61024 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC11.98□□□□□ -0.49
CKS1BP61024 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC11.98□□□□□ -0.49
CKS1BP61024 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC11.98□□□□□ -0.49
CKS1BP61024 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC11.98□□□□□ -0.49
CKS1BP61024 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
CKS1BP61024 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC11.98□□□□□ -0.49
CKS1BP61024 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 SLC25A1P2-201ENST00000430693 912 ntBASIC11.98□□□□□ -0.49
CKS1BP61024 FAM201B-201ENST00000458407 597 ntBASIC11.98□□□□□ -0.49
CKS1BP61024 CD99P1-205ENST00000527459 561 ntBASIC11.98□□□□□ -0.49
CKS1BP61024 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC11.98□□□□□ -0.49
CKS1BP61024 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC11.98□□□□□ -0.49
CKS1BP61024 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC11.98□□□□□ -0.49
CKS1BP61024 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC11.98□□□□□ -0.49
CKS1BP61024 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC11.98□□□□□ -0.49
CKS1BP61024 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CKS1BP61024 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms