Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.48■□□□□ 0.23
FOXA1P55317 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.48■□□□□ 0.23
FOXA1P55317 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.48■□□□□ 0.23
FOXA1P55317 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.48■□□□□ 0.23
FOXA1P55317 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
FOXA1P55317 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.48■□□□□ 0.23
FOXA1P55317 AC069148.1-201ENST00000608741 768 ntBASIC16.48■□□□□ 0.23
FOXA1P55317 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 AC005052.1-201ENST00000625181 2492 ntBASIC16.48■□□□□ 0.23
FOXA1P55317 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.48■□□□□ 0.23
FOXA1P55317 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA1P55317 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
FOXA1P55317 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
FOXA1P55317 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
FOXA1P55317 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA1P55317 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.47■□□□□ 0.23
FOXA1P55317 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.47■□□□□ 0.23
FOXA1P55317 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA1P55317 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.47■□□□□ 0.23
FOXA1P55317 CYP2T1P-202ENST00000641596 2535 ntBASIC16.47■□□□□ 0.23
FOXA1P55317 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA1P55317 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
FOXA1P55317 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
FOXA1P55317 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA1P55317 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.47■□□□□ 0.23
FOXA1P55317 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA1P55317 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA1P55317 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
FOXA1P55317 AP002490.2-201ENST00000524791 560 ntBASIC16.47■□□□□ 0.23
FOXA1P55317 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.47■□□□□ 0.23
FOXA1P55317 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.47■□□□□ 0.23
FOXA1P55317 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA1P55317 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA1P55317 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA1P55317 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA1P55317 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA1P55317 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA1P55317 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.47■□□□□ 0.23
FOXA1P55317 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA1P55317 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA1P55317 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA1P55317 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA1P55317 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.47■□□□□ 0.23
FOXA1P55317 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA1P55317 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA1P55317 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA1P55317 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.47■□□□□ 0.23
FOXA1P55317 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
FOXA1P55317 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.46■□□□□ 0.23
FOXA1P55317 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.46■□□□□ 0.23
FOXA1P55317 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
FOXA1P55317 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA1P55317 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA1P55317 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA1P55317 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA1P55317 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.46■□□□□ 0.23
FOXA1P55317 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA1P55317 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA1P55317 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.46■□□□□ 0.23
FOXA1P55317 ATP5G2P1-201ENST00000433580 426 ntBASIC16.46■□□□□ 0.23
FOXA1P55317 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA1P55317 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
FOXA1P55317 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.46■□□□□ 0.23
FOXA1P55317 AP001269.4-201ENST00000609611 512 ntBASIC16.46■□□□□ 0.23
FOXA1P55317 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA1P55317 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA1P55317 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA1P55317 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA1P55317 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA1P55317 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA1P55317 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.46■□□□□ 0.23
FOXA1P55317 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA1P55317 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
FOXA1P55317 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.46■□□□□ 0.23
FOXA1P55317 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA1P55317 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.46■□□□□ 0.23
FOXA1P55317 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA1P55317 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
FOXA1P55317 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA1P55317 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.46■□□□□ 0.23
FOXA1P55317 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA1P55317 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA1P55317 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.46■□□□□ 0.23
FOXA1P55317 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
FOXA1P55317 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.46■□□□□ 0.22
FOXA1P55317 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
FOXA1P55317 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
FOXA1P55317 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
FOXA1P55317 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms