Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
PDX1P52945 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDX1P52945 AL645608.8-201ENST00000606034 2086 ntBASIC16.51■□□□□ 0.23
PDX1P52945 AC141586.5-201ENST00000624546 2050 ntBASIC16.51■□□□□ 0.23
PDX1P52945 AL135999.2-201ENST00000622438 1686 ntBASIC16.51■□□□□ 0.23
PDX1P52945 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDX1P52945 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
PDX1P52945 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.51■□□□□ 0.23
PDX1P52945 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.51■□□□□ 0.23
PDX1P52945 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.51■□□□□ 0.23
PDX1P52945 PAWRP1-201ENST00000451083 565 ntBASIC16.51■□□□□ 0.23
PDX1P52945 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.51■□□□□ 0.23
PDX1P52945 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.51■□□□□ 0.23
PDX1P52945 AC022145.2-201ENST00000598203 171 ntBASIC16.51■□□□□ 0.23
PDX1P52945 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.51■□□□□ 0.23
PDX1P52945 REXO1L3P-201ENST00000622202 1288 ntBASIC16.51■□□□□ 0.23
PDX1P52945 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDX1P52945 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.51■□□□□ 0.23
PDX1P52945 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.51■□□□□ 0.23
PDX1P52945 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PDX1P52945 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PDX1P52945 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
PDX1P52945 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDX1P52945 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.51■□□□□ 0.23
PDX1P52945 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PDX1P52945 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PDX1P52945 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
PDX1P52945 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
PDX1P52945 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.5■□□□□ 0.23
PDX1P52945 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.5■□□□□ 0.23
PDX1P52945 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.5■□□□□ 0.23
PDX1P52945 CALY-203ENST00000368558 825 ntTSL 5 BASIC16.5■□□□□ 0.23
PDX1P52945 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.5■□□□□ 0.23
PDX1P52945 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.5■□□□□ 0.23
PDX1P52945 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.5■□□□□ 0.23
PDX1P52945 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.5■□□□□ 0.23
PDX1P52945 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.5■□□□□ 0.23
PDX1P52945 SLC25A6P2-201ENST00000497974 877 ntBASIC16.5■□□□□ 0.23
PDX1P52945 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.5■□□□□ 0.23
PDX1P52945 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.5■□□□□ 0.23
PDX1P52945 SPCS2P1-201ENST00000561636 679 ntBASIC16.5■□□□□ 0.23
PDX1P52945 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
PDX1P52945 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.5■□□□□ 0.23
PDX1P52945 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.5■□□□□ 0.23
PDX1P52945 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
PDX1P52945 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.5■□□□□ 0.23
PDX1P52945 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
PDX1P52945 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
PDX1P52945 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDX1P52945 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.5■□□□□ 0.23
PDX1P52945 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
PDX1P52945 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
PDX1P52945 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.49■□□□□ 0.23
PDX1P52945 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
PDX1P52945 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDX1P52945 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDX1P52945 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDX1P52945 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDX1P52945 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDX1P52945 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
PDX1P52945 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PDX1P52945 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDX1P52945 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDX1P52945 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDX1P52945 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.49■□□□□ 0.23
PDX1P52945 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.49■□□□□ 0.23
PDX1P52945 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.49■□□□□ 0.23
PDX1P52945 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.49■□□□□ 0.23
PDX1P52945 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.49■□□□□ 0.23
PDX1P52945 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDX1P52945 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDX1P52945 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.49■□□□□ 0.23
PDX1P52945 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.49■□□□□ 0.23
PDX1P52945 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.49■□□□□ 0.23
PDX1P52945 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.49■□□□□ 0.23
PDX1P52945 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDX1P52945 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDX1P52945 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDX1P52945 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms