Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC13.96□□□□□ -0.17
CDX1P47902 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
CDX1P47902 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
CDX1P47902 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
CDX1P47902 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
CDX1P47902 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
CDX1P47902 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
CDX1P47902 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.18
CDX1P47902 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
CDX1P47902 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
CDX1P47902 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
CDX1P47902 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC13.95□□□□□ -0.18
CDX1P47902 WT1-209ENST00000530998 2421 ntTSL 2 BASIC13.95□□□□□ -0.18
CDX1P47902 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDX1P47902 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDX1P47902 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDX1P47902 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
CDX1P47902 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDX1P47902 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CDX1P47902 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
CDX1P47902 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
CDX1P47902 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC13.95□□□□□ -0.18
CDX1P47902 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CDX1P47902 CCS-201ENST00000310190 942 ntTSL 5 BASIC13.95□□□□□ -0.18
CDX1P47902 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDX1P47902 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CDX1P47902 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDX1P47902 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
CDX1P47902 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
CDX1P47902 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC13.95□□□□□ -0.18
CDX1P47902 KRT18P31-201ENST00000506277 1292 ntBASIC13.95□□□□□ -0.18
CDX1P47902 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDX1P47902 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC13.95□□□□□ -0.18
CDX1P47902 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC13.95□□□□□ -0.18
CDX1P47902 TPM1-218ENST00000559281 851 ntTSL 5 BASIC13.95□□□□□ -0.18
CDX1P47902 AP005901.3-202ENST00000581653 237 ntBASIC13.95□□□□□ -0.18
CDX1P47902 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC13.95□□□□□ -0.18
CDX1P47902 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC13.95□□□□□ -0.18
CDX1P47902 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDX1P47902 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDX1P47902 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDX1P47902 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDX1P47902 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC13.95□□□□□ -0.18
CDX1P47902 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDX1P47902 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC13.95□□□□□ -0.18
CDX1P47902 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
CDX1P47902 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDX1P47902 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
CDX1P47902 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
CDX1P47902 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC13.94□□□□□ -0.18
CDX1P47902 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC13.94□□□□□ -0.18
CDX1P47902 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC13.94□□□□□ -0.18
CDX1P47902 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC13.94□□□□□ -0.18
CDX1P47902 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 AC004870.1-201ENST00000315132 882 ntBASIC13.94□□□□□ -0.18
CDX1P47902 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
CDX1P47902 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC13.94□□□□□ -0.18
CDX1P47902 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
CDX1P47902 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 DANCR-204ENST00000444958 709 ntTSL 3 BASIC13.94□□□□□ -0.18
CDX1P47902 FAAHP1-202ENST00000446499 1238 ntBASIC13.94□□□□□ -0.18
CDX1P47902 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC13.94□□□□□ -0.18
CDX1P47902 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
CDX1P47902 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC13.94□□□□□ -0.18
CDX1P47902 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC13.94□□□□□ -0.18
CDX1P47902 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC13.94□□□□□ -0.18
CDX1P47902 FICD-205ENST00000552758 603 ntTSL 2 BASIC13.94□□□□□ -0.18
CDX1P47902 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC13.94□□□□□ -0.18
CDX1P47902 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC13.94□□□□□ -0.18
CDX1P47902 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC13.94□□□□□ -0.18
CDX1P47902 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC13.94□□□□□ -0.18
CDX1P47902 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC13.94□□□□□ -0.18
CDX1P47902 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC13.94□□□□□ -0.18
CDX1P47902 CCNC-219ENST00000627680 896 ntTSL 5 BASIC13.94□□□□□ -0.18
CDX1P47902 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC13.94□□□□□ -0.18
CDX1P47902 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC13.94□□□□□ -0.18
CDX1P47902 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CDX1P47902 CA12-203ENST00000422263 2556 ntTSL 2 BASIC13.94□□□□□ -0.18
CDX1P47902 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC13.94□□□□□ -0.18
CDX1P47902 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
CDX1P47902 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms