Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN9P43378 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN9P43378 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.64■□□□□ 0.41
PTPN9P43378 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.64■□□□□ 0.41
PTPN9P43378 AC009947.1-201ENST00000444350 727 ntBASIC17.64■□□□□ 0.41
PTPN9P43378 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.64■□□□□ 0.41
PTPN9P43378 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.64■□□□□ 0.41
PTPN9P43378 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.64■□□□□ 0.41
PTPN9P43378 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.64■□□□□ 0.41
PTPN9P43378 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.64■□□□□ 0.41
PTPN9P43378 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.41
PTPN9P43378 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.64■□□□□ 0.41
PTPN9P43378 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.64■□□□□ 0.41
PTPN9P43378 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.64■□□□□ 0.41
PTPN9P43378 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN9P43378 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.64■□□□□ 0.41
PTPN9P43378 AL139011.1-202ENST00000642063 584 ntBASIC17.64■□□□□ 0.41
PTPN9P43378 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN9P43378 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.64■□□□□ 0.41
PTPN9P43378 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.64■□□□□ 0.41
PTPN9P43378 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
PTPN9P43378 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.64■□□□□ 0.41
PTPN9P43378 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
PTPN9P43378 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.64■□□□□ 0.41
PTPN9P43378 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.64■□□□□ 0.41
PTPN9P43378 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN9P43378 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN9P43378 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
PTPN9P43378 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.63■□□□□ 0.41
PTPN9P43378 FLJ38576-201ENST00000623820 2459 ntBASIC17.63■□□□□ 0.41
PTPN9P43378 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.63■□□□□ 0.41
PTPN9P43378 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN9P43378 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN9P43378 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN9P43378 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.63■□□□□ 0.41
PTPN9P43378 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN9P43378 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.63■□□□□ 0.41
PTPN9P43378 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
PTPN9P43378 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN9P43378 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN9P43378 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.63■□□□□ 0.41
PTPN9P43378 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.63■□□□□ 0.41
PTPN9P43378 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
PTPN9P43378 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN9P43378 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN9P43378 RNA5SP415-201ENST00000517246 115 ntBASIC17.63■□□□□ 0.41
PTPN9P43378 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.63■□□□□ 0.41
PTPN9P43378 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.63■□□□□ 0.41
PTPN9P43378 AC005412.3-201ENST00000580309 715 ntBASIC17.63■□□□□ 0.41
PTPN9P43378 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
PTPN9P43378 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
PTPN9P43378 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.63■□□□□ 0.41
PTPN9P43378 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN9P43378 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.63■□□□□ 0.41
PTPN9P43378 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.63■□□□□ 0.41
PTPN9P43378 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.63■□□□□ 0.41
PTPN9P43378 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN9P43378 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
PTPN9P43378 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN9P43378 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.63■□□□□ 0.41
PTPN9P43378 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.63■□□□□ 0.41
PTPN9P43378 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.63■□□□□ 0.41
PTPN9P43378 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.63■□□□□ 0.41
PTPN9P43378 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN9P43378 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
PTPN9P43378 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN9P43378 AL353732.1-201ENST00000569618 1459 ntBASIC17.63■□□□□ 0.41
PTPN9P43378 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.63■□□□□ 0.41
PTPN9P43378 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.62■□□□□ 0.41
PTPN9P43378 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
PTPN9P43378 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.62■□□□□ 0.41
PTPN9P43378 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
PTPN9P43378 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
PTPN9P43378 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.62■□□□□ 0.41
PTPN9P43378 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.62■□□□□ 0.41
PTPN9P43378 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.62■□□□□ 0.41
PTPN9P43378 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
PTPN9P43378 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.62■□□□□ 0.41
PTPN9P43378 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.62■□□□□ 0.41
PTPN9P43378 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.62■□□□□ 0.41
PTPN9P43378 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
PTPN9P43378 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.62■□□□□ 0.41
PTPN9P43378 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
PTPN9P43378 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN9P43378 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.62■□□□□ 0.41
PTPN9P43378 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms