Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HTTP42858 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
HTTP42858 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HTTP42858 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
HTTP42858 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC18.81■□□□□ 0.6
HTTP42858 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC18.81■□□□□ 0.6
HTTP42858 TEX48-202ENST00000612244 662 ntTSL 3 BASIC18.81■□□□□ 0.6
HTTP42858 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HTTP42858 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.81■□□□□ 0.6
HTTP42858 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HTTP42858 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.81■□□□□ 0.6
HTTP42858 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HTTP42858 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC18.8■□□□□ 0.6
HTTP42858 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC18.8■□□□□ 0.6
HTTP42858 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC18.8■□□□□ 0.6
HTTP42858 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HTTP42858 AC091167.2-201ENST00000579581 588 ntBASIC18.8■□□□□ 0.6
HTTP42858 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC18.8■□□□□ 0.6
HTTP42858 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HTTP42858 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC18.8■□□□□ 0.6
HTTP42858 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.8■□□□□ 0.6
HTTP42858 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HTTP42858 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
HTTP42858 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HTTP42858 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HTTP42858 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HTTP42858 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.8■□□□□ 0.6
HTTP42858 AC055876.2-201ENST00000531834 546 ntBASIC18.8■□□□□ 0.6
HTTP42858 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
HTTP42858 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HTTP42858 SLC25A24-204ENST00000569674 2357 ntBASIC18.8■□□□□ 0.6
HTTP42858 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HTTP42858 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HTTP42858 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC18.8■□□□□ 0.6
HTTP42858 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HTTP42858 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HTTP42858 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HTTP42858 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HTTP42858 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HTTP42858 WT1-AS_2.1-201ENST00000613208 137 ntBASIC18.8■□□□□ 0.6
HTTP42858 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.79■□□□□ 0.6
HTTP42858 AL355312.1-201ENST00000407115 2176 ntBASIC18.79■□□□□ 0.6
HTTP42858 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.79■□□□□ 0.6
HTTP42858 AC093525.8-201ENST00000624099 1342 ntBASIC18.79■□□□□ 0.6
HTTP42858 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HTTP42858 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC18.79■□□□□ 0.6
HTTP42858 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC18.79■□□□□ 0.6
HTTP42858 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC18.79■□□□□ 0.6
HTTP42858 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
HTTP42858 AC104989.1-201ENST00000519711 778 ntBASIC18.79■□□□□ 0.6
HTTP42858 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC18.79■□□□□ 0.6
HTTP42858 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC18.79■□□□□ 0.6
HTTP42858 MIR8072-201ENST00000614241 80 ntBASIC18.79■□□□□ 0.6
HTTP42858 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.79■□□□□ 0.6
HTTP42858 AP000974.1-201ENST00000623909 2387 ntBASIC18.79■□□□□ 0.6
HTTP42858 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
HTTP42858 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.79■□□□□ 0.6
HTTP42858 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC18.79■□□□□ 0.6
HTTP42858 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC18.79■□□□□ 0.6
HTTP42858 SNX1-214ENST00000625244 324 ntTSL 5 BASIC18.79■□□□□ 0.6
HTTP42858 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
HTTP42858 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.79■□□□□ 0.6
HTTP42858 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.79■□□□□ 0.6
HTTP42858 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.79■□□□□ 0.6
HTTP42858 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HTTP42858 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.79■□□□□ 0.6
HTTP42858 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HTTP42858 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HTTP42858 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC18.78■□□□□ 0.6
HTTP42858 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC18.78■□□□□ 0.6
HTTP42858 SRD5A3P1-201ENST00000603021 949 ntBASIC18.78■□□□□ 0.6
HTTP42858 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC18.78■□□□□ 0.6
HTTP42858 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
HTTP42858 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC18.78■□□□□ 0.6
HTTP42858 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.78■□□□□ 0.6
HTTP42858 AL353705.2-201ENST00000428243 662 ntBASIC18.78■□□□□ 0.6
HTTP42858 CSF2RBP1-201ENST00000447905 391 ntBASIC18.78■□□□□ 0.6
HTTP42858 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC18.78■□□□□ 0.6
HTTP42858 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC18.78■□□□□ 0.6
HTTP42858 AC010319.3-201ENST00000597028 470 ntBASIC18.78■□□□□ 0.6
HTTP42858 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
HTTP42858 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
HTTP42858 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HTTP42858 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.78■□□□□ 0.6
HTTP42858 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HTTP42858 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HTTP42858 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
HTTP42858 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC18.78■□□□□ 0.6
HTTP42858 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC18.78■□□□□ 0.6
HTTP42858 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC18.78■□□□□ 0.6
HTTP42858 AC114501.2-201ENST00000439631 535 ntBASIC18.78■□□□□ 0.6
HTTP42858 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HTTP42858 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HTTP42858 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
HTTP42858 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HTTP42858 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HTTP42858 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
HTTP42858 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.77■□□□□ 0.6
HTTP42858 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.77■□□□□ 0.6
HTTP42858 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms