Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCNFP41002 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCNFP41002 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCNFP41002 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCNFP41002 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCNFP41002 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNFP41002 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CCNFP41002 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
CCNFP41002 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNFP41002 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.13■□□□□ 0.33
CCNFP41002 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.13■□□□□ 0.33
CCNFP41002 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CCNFP41002 GPR89P-201ENST00000407924 1495 ntBASIC17.13■□□□□ 0.33
CCNFP41002 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC17.13■□□□□ 0.33
CCNFP41002 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNFP41002 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC17.13■□□□□ 0.33
CCNFP41002 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.13■□□□□ 0.33
CCNFP41002 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CCNFP41002 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNFP41002 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNFP41002 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CCNFP41002 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNFP41002 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCNFP41002 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.13■□□□□ 0.33
CCNFP41002 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.13■□□□□ 0.33
CCNFP41002 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.13■□□□□ 0.33
CCNFP41002 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.13■□□□□ 0.33
CCNFP41002 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.13■□□□□ 0.33
CCNFP41002 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CCNFP41002 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCNFP41002 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.13■□□□□ 0.33
CCNFP41002 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNFP41002 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.13■□□□□ 0.33
CCNFP41002 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.13■□□□□ 0.33
CCNFP41002 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCNFP41002 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNFP41002 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNFP41002 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.13■□□□□ 0.33
CCNFP41002 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNFP41002 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNFP41002 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.13■□□□□ 0.33
CCNFP41002 AL513523.2-202ENST00000427283 2040 ntBASIC17.13■□□□□ 0.33
CCNFP41002 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.13■□□□□ 0.33
CCNFP41002 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.13■□□□□ 0.33
CCNFP41002 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCNFP41002 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CCNFP41002 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.12■□□□□ 0.33
CCNFP41002 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CCNFP41002 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
CCNFP41002 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 AC009336.1-201ENST00000608941 1553 ntBASIC17.12■□□□□ 0.33
CCNFP41002 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CCNFP41002 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.12■□□□□ 0.33
CCNFP41002 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.12■□□□□ 0.33
CCNFP41002 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.12■□□□□ 0.33
CCNFP41002 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.12■□□□□ 0.33
CCNFP41002 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CCNFP41002 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.12■□□□□ 0.33
CCNFP41002 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.12■□□□□ 0.33
CCNFP41002 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.12■□□□□ 0.33
CCNFP41002 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 AC022188.1-201ENST00000620960 1664 ntBASIC17.12■□□□□ 0.33
CCNFP41002 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
CCNFP41002 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCNFP41002 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
CCNFP41002 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCNFP41002 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.11■□□□□ 0.33
CCNFP41002 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC17.11■□□□□ 0.33
CCNFP41002 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCNFP41002 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.11■□□□□ 0.33
CCNFP41002 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCNFP41002 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.11■□□□□ 0.33
CCNFP41002 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
CCNFP41002 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCNFP41002 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.11■□□□□ 0.33
CCNFP41002 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
CCNFP41002 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCNFP41002 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCNFP41002 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCNFP41002 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCNFP41002 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.11■□□□□ 0.33
CCNFP41002 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms