Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC20.32■□□□□ 0.84
BRCA1P38398 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
BRCA1P38398 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
BRCA1P38398 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BRCA1P38398 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BRCA1P38398 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BRCA1P38398 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BRCA1P38398 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.32■□□□□ 0.84
BRCA1P38398 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
BRCA1P38398 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
BRCA1P38398 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRCA1P38398 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRCA1P38398 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC20.31■□□□□ 0.84
BRCA1P38398 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
BRCA1P38398 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC20.31■□□□□ 0.84
BRCA1P38398 APOC3-202ENST00000375345 604 ntTSL 5 BASIC20.31■□□□□ 0.84
BRCA1P38398 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC20.31■□□□□ 0.84
BRCA1P38398 NME6-203ENST00000415644 849 ntTSL 2 BASIC20.31■□□□□ 0.84
BRCA1P38398 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC20.31■□□□□ 0.84
BRCA1P38398 CSF2RBP1-201ENST00000447905 391 ntBASIC20.31■□□□□ 0.84
BRCA1P38398 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC20.31■□□□□ 0.84
BRCA1P38398 FHL2-212ENST00000607522 759 ntTSL 2 BASIC20.31■□□□□ 0.84
BRCA1P38398 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRCA1P38398 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRCA1P38398 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
BRCA1P38398 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
BRCA1P38398 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.31■□□□□ 0.84
BRCA1P38398 FRMD8P1-201ENST00000440433 1524 ntBASIC20.31■□□□□ 0.84
BRCA1P38398 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
BRCA1P38398 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC20.31■□□□□ 0.84
BRCA1P38398 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRCA1P38398 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
BRCA1P38398 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRCA1P38398 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRCA1P38398 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC20.3■□□□□ 0.84
BRCA1P38398 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC20.3■□□□□ 0.84
BRCA1P38398 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC20.3■□□□□ 0.84
BRCA1P38398 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC20.3■□□□□ 0.84
BRCA1P38398 MIR8072-201ENST00000614241 80 ntBASIC20.3■□□□□ 0.84
BRCA1P38398 AL033527.5-202ENST00000641632 1098 ntBASIC20.3■□□□□ 0.84
BRCA1P38398 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
BRCA1P38398 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRCA1P38398 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
BRCA1P38398 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
BRCA1P38398 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRCA1P38398 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
BRCA1P38398 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC20.3■□□□□ 0.84
BRCA1P38398 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC20.3■□□□□ 0.84
BRCA1P38398 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
BRCA1P38398 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC20.3■□□□□ 0.84
BRCA1P38398 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC20.3■□□□□ 0.84
BRCA1P38398 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRCA1P38398 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
BRCA1P38398 AL021920.2-201ENST00000624828 1351 ntBASIC20.3■□□□□ 0.84
BRCA1P38398 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRCA1P38398 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
BRCA1P38398 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC20.29■□□□□ 0.84
BRCA1P38398 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRCA1P38398 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRCA1P38398 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
BRCA1P38398 CTBP2P5-201ENST00000454986 1264 ntBASIC20.29■□□□□ 0.84
BRCA1P38398 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC20.29■□□□□ 0.84
BRCA1P38398 PAM16-204ENST00000571941 674 ntTSL 3 BASIC20.29■□□□□ 0.84
BRCA1P38398 ARL16-210ENST00000574938 751 ntTSL 2 BASIC20.29■□□□□ 0.84
BRCA1P38398 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
BRCA1P38398 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.29■□□□□ 0.84
BRCA1P38398 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC20.29■□□□□ 0.84
BRCA1P38398 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.29■□□□□ 0.84
BRCA1P38398 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
BRCA1P38398 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRCA1P38398 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
BRCA1P38398 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
BRCA1P38398 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC20.28■□□□□ 0.84
BRCA1P38398 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
BRCA1P38398 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
BRCA1P38398 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC20.28■□□□□ 0.84
BRCA1P38398 RHOA-206ENST00000454011 889 ntTSL 2 BASIC20.28■□□□□ 0.84
BRCA1P38398 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC20.28■□□□□ 0.84
BRCA1P38398 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC20.28■□□□□ 0.84
BRCA1P38398 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC20.28■□□□□ 0.84
BRCA1P38398 MIR5189-201ENST00000577370 114 ntBASIC20.28■□□□□ 0.84
BRCA1P38398 RN7SL219P-201ENST00000582872 296 ntBASIC20.28■□□□□ 0.84
BRCA1P38398 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRCA1P38398 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRCA1P38398 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRCA1P38398 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
BRCA1P38398 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRCA1P38398 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRCA1P38398 STX1A-203ENST00000395155 783 ntTSL 2 BASIC20.28■□□□□ 0.84
BRCA1P38398 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
BRCA1P38398 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC20.28■□□□□ 0.84
BRCA1P38398 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
BRCA1P38398 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
BRCA1P38398 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC20.28■□□□□ 0.84
BRCA1P38398 MPDU1-223ENST00000582151 728 ntBASIC20.28■□□□□ 0.84
BRCA1P38398 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC20.28■□□□□ 0.84
BRCA1P38398 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC20.28■□□□□ 0.84
BRCA1P38398 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRCA1P38398 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.28■□□□□ 0.84
BRCA1P38398 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms