Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 TPR-209ENST00000613151 2478 ntTSL 5 BASIC15.14■□□□□ 0.01
CNOT4O95628 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC15.13■□□□□ 0.01
CNOT4O95628 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CNOT4O95628 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
CNOT4O95628 PMS2P2-201ENST00000425039 1128 ntBASIC15.13■□□□□ 0.01
CNOT4O95628 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.13■□□□□ 0.01
CNOT4O95628 HMGN1P19-201ENST00000436976 333 ntBASIC15.13■□□□□ 0.01
CNOT4O95628 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 PAWRP1-201ENST00000451083 565 ntBASIC15.13■□□□□ 0.01
CNOT4O95628 KRT18P3-201ENST00000451602 1288 ntBASIC15.13■□□□□ 0.01
CNOT4O95628 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.13■□□□□ 0.01
CNOT4O95628 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.13■□□□□ 0.01
CNOT4O95628 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.13■□□□□ 0.01
CNOT4O95628 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.13■□□□□ 0.01
CNOT4O95628 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.13■□□□□ 0.01
CNOT4O95628 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC15.13■□□□□ 0.01
CNOT4O95628 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.13■□□□□ 0.01
CNOT4O95628 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.13■□□□□ 0.01
CNOT4O95628 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC15.13■□□□□ 0.01
CNOT4O95628 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CNOT4O95628 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CNOT4O95628 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC15.13■□□□□ 0.01
CNOT4O95628 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CNOT4O95628 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.13■□□□□ 0.01
CNOT4O95628 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC15.13■□□□□ 0.01
CNOT4O95628 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.12■□□□□ 0.01
CNOT4O95628 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CNOT4O95628 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CNOT4O95628 PI4KAP1-204ENST00000612579 1703 ntBASIC15.12■□□□□ 0.01
CNOT4O95628 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.12■□□□□ 0.01
CNOT4O95628 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.12■□□□□ 0.01
CNOT4O95628 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC15.12■□□□□ 0.01
CNOT4O95628 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CNOT4O95628 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC15.12■□□□□ 0.01
CNOT4O95628 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 RPSAP43-201ENST00000402237 625 ntBASIC15.12■□□□□ 0.01
CNOT4O95628 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 CRYGEP-201ENST00000412192 528 ntBASIC15.12■□□□□ 0.01
CNOT4O95628 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.12■□□□□ 0.01
CNOT4O95628 DNAJB3-201ENST00000446806 729 ntBASIC15.12■□□□□ 0.01
CNOT4O95628 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC15.12■□□□□ 0.01
CNOT4O95628 AC108073.2-201ENST00000464002 357 ntBASIC15.12■□□□□ 0.01
CNOT4O95628 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC15.12■□□□□ 0.01
CNOT4O95628 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.12■□□□□ 0.01
CNOT4O95628 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC15.12■□□□□ 0.01
CNOT4O95628 AL355385.1-201ENST00000606123 409 ntBASIC15.12■□□□□ 0.01
CNOT4O95628 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.12■□□□□ 0.01
CNOT4O95628 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.12■□□□□ 0.01
CNOT4O95628 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CNOT4O95628 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CNOT4O95628 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.12■□□□□ 0.01
CNOT4O95628 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
CNOT4O95628 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CNOT4O95628 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CNOT4O95628 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CNOT4O95628 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CNOT4O95628 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms