Protein–RNA interactions for Protein: O95292

VAPB, Vesicle-associated membrane protein-associated protein B/C, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPBO95292 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VAPBO95292 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
VAPBO95292 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VAPBO95292 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VAPBO95292 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.11■□□□□ 0.33
VAPBO95292 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VAPBO95292 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VAPBO95292 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VAPBO95292 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.1■□□□□ 0.33
VAPBO95292 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
VAPBO95292 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.1■□□□□ 0.33
VAPBO95292 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
VAPBO95292 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
VAPBO95292 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
VAPBO95292 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.1■□□□□ 0.33
VAPBO95292 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.1■□□□□ 0.33
VAPBO95292 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.1■□□□□ 0.33
VAPBO95292 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.1■□□□□ 0.33
VAPBO95292 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
VAPBO95292 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
VAPBO95292 TUBB8P12-201ENST00000308911 1335 ntBASIC17.1■□□□□ 0.33
VAPBO95292 TUBB7P-202ENST00000428444 1305 ntBASIC17.1■□□□□ 0.33
VAPBO95292 TUBB8P7-204ENST00000567960 1332 ntBASIC17.1■□□□□ 0.33
VAPBO95292 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 NCF1C-201ENST00000438382 1427 ntBASIC17.1■□□□□ 0.33
VAPBO95292 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
VAPBO95292 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.1■□□□□ 0.33
VAPBO95292 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.1■□□□□ 0.33
VAPBO95292 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
VAPBO95292 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VAPBO95292 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
VAPBO95292 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.1■□□□□ 0.33
VAPBO95292 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
VAPBO95292 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VAPBO95292 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VAPBO95292 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VAPBO95292 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VAPBO95292 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VAPBO95292 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VAPBO95292 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VAPBO95292 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.09■□□□□ 0.33
VAPBO95292 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.09■□□□□ 0.33
VAPBO95292 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.09■□□□□ 0.33
VAPBO95292 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.09■□□□□ 0.33
VAPBO95292 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.09■□□□□ 0.33
VAPBO95292 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.09■□□□□ 0.33
VAPBO95292 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.09■□□□□ 0.33
VAPBO95292 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.09■□□□□ 0.33
VAPBO95292 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
VAPBO95292 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.09■□□□□ 0.33
VAPBO95292 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.09■□□□□ 0.33
VAPBO95292 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VAPBO95292 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
VAPBO95292 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
VAPBO95292 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.09■□□□□ 0.33
VAPBO95292 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VAPBO95292 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VAPBO95292 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
VAPBO95292 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.09■□□□□ 0.33
VAPBO95292 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.09■□□□□ 0.33
VAPBO95292 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
VAPBO95292 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VAPBO95292 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
VAPBO95292 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VAPBO95292 AL645728.1-201ENST00000366221 2101 ntBASIC17.09■□□□□ 0.33
VAPBO95292 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VAPBO95292 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VAPBO95292 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.09■□□□□ 0.33
VAPBO95292 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VAPBO95292 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VAPBO95292 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VAPBO95292 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
VAPBO95292 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VAPBO95292 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VAPBO95292 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
VAPBO95292 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VAPBO95292 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VAPBO95292 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
VAPBO95292 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.33
VAPBO95292 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.08■□□□□ 0.33
VAPBO95292 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms