Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 RNA5SP416-201ENST00000516838 111 ntBASIC15.82■□□□□ 0.12
PRKNO60260 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.82■□□□□ 0.12
PRKNO60260 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PRKNO60260 AC023511.2-201ENST00000618803 211 ntBASIC15.82■□□□□ 0.12
PRKNO60260 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.82■□□□□ 0.12
PRKNO60260 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PRKNO60260 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
PRKNO60260 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PRKNO60260 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PRKNO60260 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC15.82■□□□□ 0.12
PRKNO60260 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.82■□□□□ 0.12
PRKNO60260 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC15.82■□□□□ 0.12
PRKNO60260 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PRKNO60260 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
PRKNO60260 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PRKNO60260 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC15.82■□□□□ 0.12
PRKNO60260 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PRKNO60260 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PRKNO60260 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PRKNO60260 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
PRKNO60260 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PRKNO60260 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
PRKNO60260 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PRKNO60260 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.81■□□□□ 0.12
PRKNO60260 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.81■□□□□ 0.12
PRKNO60260 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PRKNO60260 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
PRKNO60260 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PRKNO60260 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
PRKNO60260 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
PRKNO60260 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PRKNO60260 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PRKNO60260 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.81■□□□□ 0.12
PRKNO60260 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.81■□□□□ 0.12
PRKNO60260 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PRKNO60260 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.81■□□□□ 0.12
PRKNO60260 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PRKNO60260 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.81■□□□□ 0.12
PRKNO60260 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PRKNO60260 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.81■□□□□ 0.12
PRKNO60260 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.81■□□□□ 0.12
PRKNO60260 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.81■□□□□ 0.12
PRKNO60260 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PRKNO60260 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PRKNO60260 AC002310.6-201ENST00000624451 1377 ntBASIC15.81■□□□□ 0.12
PRKNO60260 AC010507.1-201ENST00000633895 436 ntBASIC15.81■□□□□ 0.12
PRKNO60260 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PRKNO60260 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.8■□□□□ 0.12
PRKNO60260 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PRKNO60260 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PRKNO60260 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
PRKNO60260 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
PRKNO60260 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
PRKNO60260 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PRKNO60260 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC15.8■□□□□ 0.12
PRKNO60260 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PRKNO60260 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PRKNO60260 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
PRKNO60260 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.8■□□□□ 0.12
PRKNO60260 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.8■□□□□ 0.12
PRKNO60260 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC15.8■□□□□ 0.12
PRKNO60260 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.8■□□□□ 0.12
PRKNO60260 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.8■□□□□ 0.12
PRKNO60260 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.8■□□□□ 0.12
PRKNO60260 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.8■□□□□ 0.12
PRKNO60260 AC092865.6-201ENST00000642101 219 ntBASIC15.8■□□□□ 0.12
PRKNO60260 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
PRKNO60260 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PRKNO60260 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PRKNO60260 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PRKNO60260 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PRKNO60260 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PRKNO60260 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PRKNO60260 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
PRKNO60260 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
PRKNO60260 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.8■□□□□ 0.12
PRKNO60260 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.8■□□□□ 0.12
PRKNO60260 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PRKNO60260 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PRKNO60260 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC15.79■□□□□ 0.12
PRKNO60260 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
PRKNO60260 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PRKNO60260 WAC-202ENST00000347934 2839 ntTSL 5 BASIC15.79■□□□□ 0.12
PRKNO60260 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PRKNO60260 AC005915.1-201ENST00000624912 2018 ntBASIC15.79■□□□□ 0.12
PRKNO60260 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PRKNO60260 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PRKNO60260 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
PRKNO60260 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.79■□□□□ 0.12
PRKNO60260 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
PRKNO60260 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
PRKNO60260 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.79■□□□□ 0.12
PRKNO60260 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.79■□□□□ 0.12
PRKNO60260 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.79■□□□□ 0.12
PRKNO60260 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.79■□□□□ 0.12
PRKNO60260 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PRKNO60260 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PRKNO60260 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PRKNO60260 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PRKNO60260 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms