Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 AC002558.1-201ENST00000488906 803 ntBASIC12.48□□□□□ -0.41
SMKR1H3BMG3 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 TK1-205ENST00000590862 642 ntTSL 3 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 AC116562.4-202ENST00000641738 218 ntBASIC12.48□□□□□ -0.41
SMKR1H3BMG3 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 AL161772.1-201ENST00000610494 4412 ntBASIC12.47□□□□□ -0.41
SMKR1H3BMG3 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 AC024563.2-201ENST00000603282 481 ntBASIC12.47□□□□□ -0.41
SMKR1H3BMG3 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 MMD2-204ENST00000612910 778 ntTSL 5 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 AL359736.2-201ENST00000621992 437 ntBASIC12.47□□□□□ -0.41
SMKR1H3BMG3 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
SMKR1H3BMG3 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 FES-204ENST00000414248 2327 ntTSL 2 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC12.46□□□□□ -0.41
SMKR1H3BMG3 AC104640.1-201ENST00000562617 2109 ntBASIC12.46□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms