Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 AC011676.5-201ENST00000624864 2660 ntBASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
VPS9D1Q9Y2B5 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
VPS9D1Q9Y2B5 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.3
VPS9D1Q9Y2B5 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VPS9D1Q9Y2B5 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
VPS9D1Q9Y2B5 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 CLEC4GP1-201ENST00000596555 870 ntBASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 TERC-201ENST00000602385 541 ntBASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 AC064862.7-201ENST00000604520 867 ntBASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS9D1Q9Y2B5 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 AC243591.1-201ENST00000452967 1364 ntBASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 KRT18P56-201ENST00000507275 550 ntBASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 SART3-203ENST00000546611 1184 ntBASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 AC006557.2-201ENST00000592985 1240 ntBASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 AC103798.2-201ENST00000624292 632 ntBASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS9D1Q9Y2B5 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 LAGE3P1-201ENST00000425356 484 ntBASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS9D1Q9Y2B5 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms