Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
CCDC39Q9UFE4 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC19.77■□□□□ 0.75
CCDC39Q9UFE4 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CCDC39Q9UFE4 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CCDC39Q9UFE4 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 AP002383.4-201ENST00000442518 975 ntBASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 TPSP2-201ENST00000561760 610 ntBASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 AC109462.3-201ENST00000573934 613 ntBASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 AL445228.2-201ENST00000605589 952 ntBASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 AC069148.1-201ENST00000608741 768 ntBASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 AC010331.1-201ENST00000611423 582 ntBASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 AC105917.1-201ENST00000506637 2539 ntBASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC39Q9UFE4 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 AC092850.2-201ENST00000623821 2697 ntBASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 MIR1224-201ENST00000408193 85 ntBASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 TOB2P1-201ENST00000469761 992 ntBASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 AC111152.3-201ENST00000569699 673 ntBASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 AP005901.3-202ENST00000581653 237 ntBASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 AC019129.2-201ENST00000609837 1235 ntBASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC39Q9UFE4 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 AMT-250ENST00000637682 1823 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 LINC00265-3P-201ENST00000447588 903 ntBASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.74■□□□□ 0.75
CCDC39Q9UFE4 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms