Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 AC090340.1-201ENST00000620778 4980 ntBASIC17.43■□□□□ 0.38
TDP1Q9NUW8 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 UXT-AS1-201ENST00000590504 1525 ntBASIC17.43■□□□□ 0.38
TDP1Q9NUW8 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 GPS2P2-201ENST00000430745 888 ntBASIC17.43■□□□□ 0.38
TDP1Q9NUW8 RBPMS2P1-201ENST00000437762 623 ntBASIC17.43■□□□□ 0.38
TDP1Q9NUW8 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 AC005498.2-205ENST00000593218 784 ntBASIC17.43■□□□□ 0.38
TDP1Q9NUW8 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 KRT8P49-201ENST00000604166 1432 ntBASIC17.43■□□□□ 0.38
TDP1Q9NUW8 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TDP1Q9NUW8 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 BCRP1-201ENST00000444246 691 ntBASIC17.42■□□□□ 0.38
TDP1Q9NUW8 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 AC084121.4-201ENST00000641598 221 ntBASIC17.42■□□□□ 0.38
TDP1Q9NUW8 AF228730.8-201ENST00000642140 221 ntBASIC17.42■□□□□ 0.38
TDP1Q9NUW8 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TDP1Q9NUW8 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.41■□□□□ 0.38
TDP1Q9NUW8 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms