Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 TUBB8P12-201ENST00000308911 1335 ntBASIC21.83■■□□□ 1.09
SMC4Q9NTJ3 TUBB7P-202ENST00000428444 1305 ntBASIC21.83■■□□□ 1.09
SMC4Q9NTJ3 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SMC4Q9NTJ3 TUBB8P7-204ENST00000567960 1332 ntBASIC21.83■■□□□ 1.09
SMC4Q9NTJ3 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SMC4Q9NTJ3 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SMC4Q9NTJ3 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC21.83■■□□□ 1.09
SMC4Q9NTJ3 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SMC4Q9NTJ3 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SMC4Q9NTJ3 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
SMC4Q9NTJ3 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SMC4Q9NTJ3 SLC25A6P2-201ENST00000497974 877 ntBASIC21.83■■□□□ 1.09
SMC4Q9NTJ3 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC21.83■■□□□ 1.09
SMC4Q9NTJ3 KLK8-205ENST00000593490 267 ntTSL 3 BASIC21.83■■□□□ 1.09
SMC4Q9NTJ3 AC008667.4-201ENST00000607370 168 ntBASIC21.83■■□□□ 1.09
SMC4Q9NTJ3 AC116407.3-201ENST00000623905 1129 ntBASIC21.83■■□□□ 1.09
SMC4Q9NTJ3 AC005593.1-201ENST00000624894 515 ntBASIC21.83■■□□□ 1.09
SMC4Q9NTJ3 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SMC4Q9NTJ3 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC21.83■■□□□ 1.09
SMC4Q9NTJ3 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SMC4Q9NTJ3 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
SMC4Q9NTJ3 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC21.83■■□□□ 1.08
SMC4Q9NTJ3 AGGF1P2-201ENST00000426656 2106 ntBASIC21.83■■□□□ 1.08
SMC4Q9NTJ3 AC002310.6-201ENST00000624451 1377 ntBASIC21.83■■□□□ 1.08
SMC4Q9NTJ3 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SMC4Q9NTJ3 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
SMC4Q9NTJ3 AC078925.2-201ENST00000624013 1973 ntBASIC21.83■■□□□ 1.08
SMC4Q9NTJ3 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.08
SMC4Q9NTJ3 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SMC4Q9NTJ3 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC21.83■■□□□ 1.08
SMC4Q9NTJ3 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
SMC4Q9NTJ3 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 AC098831.1-202ENST00000438821 336 ntBASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 IGHV3-65-201ENST00000523210 341 ntBASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 ABBA01031661.1-201ENST00000634362 1253 ntBASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
SMC4Q9NTJ3 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 RIN3-211ENST00000557762 517 ntTSL 3 BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 LITAF-211ENST00000572255 516 ntTSL 4 BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 AL021920.2-201ENST00000624828 1351 ntBASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMC4Q9NTJ3 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 CA12-203ENST00000422263 2556 ntTSL 2 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 FLJ38576-201ENST00000623820 2459 ntBASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC21.8■■□□□ 1.08
SMC4Q9NTJ3 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms