Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 PAWRP1-201ENST00000451083 565 ntBASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TM9SF3Q9HD45 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TM9SF3Q9HD45 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TM9SF3Q9HD45 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.02■□□□□ 0.31
TM9SF3Q9HD45 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.02■□□□□ 0.31
TM9SF3Q9HD45 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.02■□□□□ 0.31
TM9SF3Q9HD45 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.02■□□□□ 0.31
TM9SF3Q9HD45 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TM9SF3Q9HD45 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.02■□□□□ 0.31
TM9SF3Q9HD45 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TM9SF3Q9HD45 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TM9SF3Q9HD45 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.31
TM9SF3Q9HD45 REXO1L11P-201ENST00000620964 1927 ntBASIC17.02■□□□□ 0.31
TM9SF3Q9HD45 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TM9SF3Q9HD45 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TM9SF3Q9HD45 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
TM9SF3Q9HD45 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 AC124067.4-201ENST00000519691 2379 ntBASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 AC004449.1-201ENST00000564240 433 ntBASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 PCDHA12-202ENST00000613593 2588 ntBASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TM9SF3Q9HD45 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TM9SF3Q9HD45 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TM9SF3Q9HD45 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TM9SF3Q9HD45 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17■□□□□ 0.31
TM9SF3Q9HD45 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
TM9SF3Q9HD45 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TM9SF3Q9HD45 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
TM9SF3Q9HD45 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17■□□□□ 0.31
TM9SF3Q9HD45 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17■□□□□ 0.31
TM9SF3Q9HD45 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17■□□□□ 0.31
TM9SF3Q9HD45 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
TM9SF3Q9HD45 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17■□□□□ 0.31
TM9SF3Q9HD45 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17■□□□□ 0.31
TM9SF3Q9HD45 SLC25A6P2-201ENST00000497974 877 ntBASIC17■□□□□ 0.31
TM9SF3Q9HD45 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17■□□□□ 0.31
TM9SF3Q9HD45 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
TM9SF3Q9HD45 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17■□□□□ 0.31
TM9SF3Q9HD45 AC022145.2-201ENST00000598203 171 ntBASIC17■□□□□ 0.31
TM9SF3Q9HD45 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
TM9SF3Q9HD45 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17■□□□□ 0.31
TM9SF3Q9HD45 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
TM9SF3Q9HD45 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TM9SF3Q9HD45 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17■□□□□ 0.31
TM9SF3Q9HD45 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17■□□□□ 0.31
TM9SF3Q9HD45 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
TM9SF3Q9HD45 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
TM9SF3Q9HD45 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17■□□□□ 0.31
TM9SF3Q9HD45 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TM9SF3Q9HD45 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
TM9SF3Q9HD45 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17■□□□□ 0.31
TM9SF3Q9HD45 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TM9SF3Q9HD45 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17■□□□□ 0.31
TM9SF3Q9HD45 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TM9SF3Q9HD45 AL121761.2-201ENST00000598007 1648 ntBASIC16.99■□□□□ 0.31
TM9SF3Q9HD45 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms