Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PCDH9Q9HC56 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.6■□□□□ 0.41
PCDH9Q9HC56 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
PCDH9Q9HC56 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
PCDH9Q9HC56 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
PCDH9Q9HC56 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PCDH9Q9HC56 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.6■□□□□ 0.41
PCDH9Q9HC56 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
PCDH9Q9HC56 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.6■□□□□ 0.41
PCDH9Q9HC56 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PCDH9Q9HC56 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PCDH9Q9HC56 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
PCDH9Q9HC56 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PCDH9Q9HC56 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 SIGLEC16-201ENST00000599858 1437 ntBASIC17.59■□□□□ 0.41
PCDH9Q9HC56 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 ACTG1P4-201ENST00000425123 1122 ntBASIC17.59■□□□□ 0.41
PCDH9Q9HC56 AF238378.1-201ENST00000526806 358 ntBASIC17.59■□□□□ 0.41
PCDH9Q9HC56 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
PCDH9Q9HC56 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDH9Q9HC56 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.58■□□□□ 0.41
PCDH9Q9HC56 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.58■□□□□ 0.41
PCDH9Q9HC56 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDH9Q9HC56 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDH9Q9HC56 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDH9Q9HC56 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDH9Q9HC56 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDH9Q9HC56 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDH9Q9HC56 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 EMBP1-201ENST00000458200 901 ntBASIC17.58■□□□□ 0.4
PCDH9Q9HC56 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 AC073592.4-201ENST00000623827 446 ntBASIC17.58■□□□□ 0.4
PCDH9Q9HC56 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDH9Q9HC56 AC148477.5-201ENST00000625164 1645 ntBASIC17.58■□□□□ 0.4
PCDH9Q9HC56 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.57■□□□□ 0.4
PCDH9Q9HC56 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDH9Q9HC56 HLA-A-202ENST00000376806 1854 ntBASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms