Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP29Q9HBJ7 AL645728.1-201ENST00000366221 2101 ntBASIC17.55■□□□□ 0.4
USP29Q9HBJ7 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP29Q9HBJ7 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
USP29Q9HBJ7 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP29Q9HBJ7 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.55■□□□□ 0.4
USP29Q9HBJ7 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.55■□□□□ 0.4
USP29Q9HBJ7 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.55■□□□□ 0.4
USP29Q9HBJ7 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.55■□□□□ 0.4
USP29Q9HBJ7 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP29Q9HBJ7 PCDHB19P-201ENST00000570871 2371 ntBASIC17.55■□□□□ 0.4
USP29Q9HBJ7 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
USP29Q9HBJ7 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP29Q9HBJ7 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP29Q9HBJ7 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP29Q9HBJ7 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP29Q9HBJ7 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP29Q9HBJ7 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
USP29Q9HBJ7 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP29Q9HBJ7 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.55■□□□□ 0.4
USP29Q9HBJ7 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.55■□□□□ 0.4
USP29Q9HBJ7 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.55■□□□□ 0.4
USP29Q9HBJ7 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP29Q9HBJ7 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.54■□□□□ 0.4
USP29Q9HBJ7 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 AP002414.1-201ENST00000391405 1147 ntBASIC17.54■□□□□ 0.4
USP29Q9HBJ7 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 FGFR3P6-201ENST00000457012 610 ntBASIC17.54■□□□□ 0.4
USP29Q9HBJ7 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 AC139887.3-201ENST00000568585 713 ntBASIC17.54■□□□□ 0.4
USP29Q9HBJ7 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP29Q9HBJ7 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 AL590787.1-201ENST00000568856 1315 ntBASIC17.53■□□□□ 0.4
USP29Q9HBJ7 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 RPP21-221ENST00000428040 594 ntTSL 2 BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 MTDHP3-201ENST00000594186 672 ntBASIC17.53■□□□□ 0.4
USP29Q9HBJ7 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP29Q9HBJ7 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.52■□□□□ 0.4
USP29Q9HBJ7 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP29Q9HBJ7 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP29Q9HBJ7 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USP29Q9HBJ7 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.52■□□□□ 0.4
USP29Q9HBJ7 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
USP29Q9HBJ7 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
USP29Q9HBJ7 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.52■□□□□ 0.4
USP29Q9HBJ7 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USP29Q9HBJ7 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USP29Q9HBJ7 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.52■□□□□ 0.4
USP29Q9HBJ7 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USP29Q9HBJ7 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms