Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAIPQ9BWF2 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 LBH-203ENST00000404397 543 ntTSL 4 BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 AP002472.1-201ENST00000577490 586 ntBASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 AC068137.2-201ENST00000605408 478 ntBASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 AC091812.2-201ENST00000619081 385 ntBASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
TRAIPQ9BWF2 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 KRT18P28-201ENST00000453838 1332 ntBASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 CNN2P11-201ENST00000429351 262 ntBASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 FAM58CP-201ENST00000435741 640 ntBASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 AC107918.2-201ENST00000530817 355 ntBASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 AL596442.2-201ENST00000610240 980 ntBASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 AC092902.6-201ENST00000641783 218 ntBASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 AC080080.1-201ENST00000625121 2420 ntBASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAIPQ9BWF2 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 AL023806.1-201ENST00000603994 1649 ntBASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAIPQ9BWF2 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms