Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC17.52■□□□□ 0.4
CDX2Q99626 GGCT-203ENST00000409144 836 ntTSL 2 BASIC17.52■□□□□ 0.4
CDX2Q99626 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC17.52■□□□□ 0.4
CDX2Q99626 CALR4P-201ENST00000431943 946 ntBASIC17.52■□□□□ 0.4
CDX2Q99626 AC006033.1-201ENST00000440505 426 ntBASIC17.52■□□□□ 0.4
CDX2Q99626 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC17.52■□□□□ 0.4
CDX2Q99626 AC098859.1-201ENST00000502915 1238 ntBASIC17.52■□□□□ 0.4
CDX2Q99626 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC17.52■□□□□ 0.4
CDX2Q99626 MBP-227ENST00000526111 581 ntTSL 4 BASIC17.52■□□□□ 0.4
CDX2Q99626 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDX2Q99626 MIR4722-201ENST00000578292 60 ntBASIC17.52■□□□□ 0.4
CDX2Q99626 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDX2Q99626 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC17.52■□□□□ 0.4
CDX2Q99626 AL022328.1-201ENST00000610050 478 ntBASIC17.52■□□□□ 0.4
CDX2Q99626 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDX2Q99626 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDX2Q99626 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.52■□□□□ 0.4
CDX2Q99626 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.52■□□□□ 0.4
CDX2Q99626 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.52■□□□□ 0.39
CDX2Q99626 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CDX2Q99626 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
CDX2Q99626 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
CDX2Q99626 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CDX2Q99626 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDX2Q99626 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.51■□□□□ 0.39
CDX2Q99626 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDX2Q99626 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDX2Q99626 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDX2Q99626 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDX2Q99626 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDX2Q99626 LINC00895-201ENST00000629028 1637 ntBASIC17.51■□□□□ 0.39
CDX2Q99626 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDX2Q99626 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CDX2Q99626 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDX2Q99626 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDX2Q99626 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.51■□□□□ 0.39
CDX2Q99626 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
CDX2Q99626 AC253536.4-201ENST00000440539 267 ntBASIC17.51■□□□□ 0.39
CDX2Q99626 RPL7P3-201ENST00000441388 714 ntBASIC17.51■□□□□ 0.39
CDX2Q99626 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC17.51■□□□□ 0.39
CDX2Q99626 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC17.51■□□□□ 0.39
CDX2Q99626 LDHBP1-201ENST00000455730 1119 ntBASIC17.51■□□□□ 0.39
CDX2Q99626 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.51■□□□□ 0.39
CDX2Q99626 AC104596.2-201ENST00000512793 793 ntBASIC17.51■□□□□ 0.39
CDX2Q99626 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC17.51■□□□□ 0.39
CDX2Q99626 AC010328.2-201ENST00000597698 1111 ntBASIC17.51■□□□□ 0.39
CDX2Q99626 AL118558.3-201ENST00000607414 1079 ntBASIC17.51■□□□□ 0.39
CDX2Q99626 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDX2Q99626 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CDX2Q99626 FLJ13224-201ENST00000313737 1514 ntBASIC17.51■□□□□ 0.39
CDX2Q99626 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.51■□□□□ 0.39
CDX2Q99626 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDX2Q99626 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDX2Q99626 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDX2Q99626 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CDX2Q99626 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDX2Q99626 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
CDX2Q99626 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.5■□□□□ 0.39
CDX2Q99626 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CDX2Q99626 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.5■□□□□ 0.39
CDX2Q99626 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDX2Q99626 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDX2Q99626 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDX2Q99626 AC131009.4-201ENST00000624048 1740 ntBASIC17.5■□□□□ 0.39
CDX2Q99626 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDX2Q99626 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDX2Q99626 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CDX2Q99626 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDX2Q99626 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDX2Q99626 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CDX2Q99626 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC17.5■□□□□ 0.39
CDX2Q99626 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC17.5■□□□□ 0.39
CDX2Q99626 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC17.5■□□□□ 0.39
CDX2Q99626 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC17.5■□□□□ 0.39
CDX2Q99626 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.5■□□□□ 0.39
CDX2Q99626 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC17.5■□□□□ 0.39
CDX2Q99626 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC17.5■□□□□ 0.39
CDX2Q99626 AC091271.1-201ENST00000611877 1162 ntBASIC17.5■□□□□ 0.39
CDX2Q99626 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.5■□□□□ 0.39
CDX2Q99626 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.5■□□□□ 0.39
CDX2Q99626 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDX2Q99626 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.5■□□□□ 0.39
CDX2Q99626 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CDX2Q99626 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
CDX2Q99626 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDX2Q99626 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.5■□□□□ 0.39
CDX2Q99626 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
CDX2Q99626 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDX2Q99626 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDX2Q99626 NOC2LP1-202ENST00000452600 2235 ntBASIC17.49■□□□□ 0.39
CDX2Q99626 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDX2Q99626 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC17.49■□□□□ 0.39
CDX2Q99626 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CDX2Q99626 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDX2Q99626 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.49■□□□□ 0.39
CDX2Q99626 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.49■□□□□ 0.39
CDX2Q99626 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDX2Q99626 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDX2Q99626 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDX2Q99626 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms