Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 PMS2P1-201ENST00000431037 1228 ntBASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 AC007967.2-201ENST00000432613 625 ntBASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
PTCHD1Q96NR3 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 MED15P5-201ENST00000423150 992 ntBASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 PRSS29P-201ENST00000440800 595 ntBASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 VN2R19P-201ENST00000442399 1052 ntBASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 PAWRP1-201ENST00000451083 565 ntBASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 AC140113.2-201ENST00000604370 208 ntBASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTCHD1Q96NR3 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 AL591424.1-201ENST00000442569 1213 ntBASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 POLD2P1-201ENST00000511220 997 ntBASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 AC010654.1-201ENST00000615722 808 ntBASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTCHD1Q96NR3 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 AC022211.2-201ENST00000585075 2527 ntBASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
PTCHD1Q96NR3 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms