Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 AC027601.4-201ENST00000611259 610 ntBASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SHROOM3Q8TF72 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
SHROOM3Q8TF72 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 ZNF259P1-201ENST00000407656 1365 ntBASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHROOM3Q8TF72 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM3Q8TF72 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.28■□□□□ 0.36
SHROOM3Q8TF72 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.28■□□□□ 0.36
SHROOM3Q8TF72 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SHROOM3Q8TF72 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHROOM3Q8TF72 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms