Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 AP000344.2-201ENST00000512987 629 ntBASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC60Q8IWA6 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC60Q8IWA6 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
CCDC60Q8IWA6 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.83■□□□□ 0.61
CCDC60Q8IWA6 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC60Q8IWA6 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC60Q8IWA6 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC60Q8IWA6 AL645608.8-201ENST00000606034 2086 ntBASIC18.83■□□□□ 0.61
CCDC60Q8IWA6 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.83■□□□□ 0.61
CCDC60Q8IWA6 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
CCDC60Q8IWA6 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC60Q8IWA6 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC60Q8IWA6 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC60Q8IWA6 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC60Q8IWA6 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC60Q8IWA6 AL121761.2-201ENST00000598007 1648 ntBASIC18.83■□□□□ 0.61
CCDC60Q8IWA6 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 LBH-203ENST00000404397 543 ntTSL 4 BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 AC004461.1-201ENST00000412461 403 ntBASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 PMS2P2-201ENST00000425039 1128 ntBASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 AC087641.1-201ENST00000557561 1021 ntBASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 AC022145.2-201ENST00000598203 171 ntBASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 AL009183.1-201ENST00000603760 355 ntBASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 WT1-AS_2.1-201ENST00000613208 137 ntBASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 AC108860.2-201ENST00000562760 2183 ntBASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC60Q8IWA6 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 MIR4492-201ENST00000581627 80 ntBASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC60Q8IWA6 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC60Q8IWA6 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms