Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
USP54Q70EL1 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC22.32■■□□□ 1.16
USP54Q70EL1 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC22.32■■□□□ 1.16
USP54Q70EL1 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
USP54Q70EL1 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC22.32■■□□□ 1.16
USP54Q70EL1 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
USP54Q70EL1 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
USP54Q70EL1 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
USP54Q70EL1 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
USP54Q70EL1 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
USP54Q70EL1 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
USP54Q70EL1 GGT4P-201ENST00000623672 1708 ntBASIC22.32■■□□□ 1.16
USP54Q70EL1 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
USP54Q70EL1 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
USP54Q70EL1 AC087499.5-201ENST00000452760 1342 ntBASIC22.32■■□□□ 1.16
USP54Q70EL1 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
USP54Q70EL1 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
USP54Q70EL1 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC22.32■■□□□ 1.16
USP54Q70EL1 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
USP54Q70EL1 AC003101.2-201ENST00000612557 442 ntBASIC22.32■■□□□ 1.16
USP54Q70EL1 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
USP54Q70EL1 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
USP54Q70EL1 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
USP54Q70EL1 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP54Q70EL1 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
USP54Q70EL1 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC22.31■■□□□ 1.16
USP54Q70EL1 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
USP54Q70EL1 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP54Q70EL1 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
USP54Q70EL1 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
USP54Q70EL1 RPL37AP1-201ENST00000412502 279 ntBASIC22.31■■□□□ 1.16
USP54Q70EL1 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC22.31■■□□□ 1.16
USP54Q70EL1 RNA5-8SN1-201ENST00000610460 153 ntBASIC22.31■■□□□ 1.16
USP54Q70EL1 RNA5-8SN5-202ENST00000612463 153 ntBASIC22.31■■□□□ 1.16
USP54Q70EL1 RNA5-8SN4-201ENST00000613359 153 ntBASIC22.31■■□□□ 1.16
USP54Q70EL1 RNA5-8SN5-201ENST00000619471 153 ntBASIC22.31■■□□□ 1.16
USP54Q70EL1 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
USP54Q70EL1 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC22.31■■□□□ 1.16
USP54Q70EL1 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC22.31■■□□□ 1.16
USP54Q70EL1 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC22.31■■□□□ 1.16
USP54Q70EL1 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP54Q70EL1 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP54Q70EL1 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC22.31■■□□□ 1.16
USP54Q70EL1 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC22.31■■□□□ 1.16
USP54Q70EL1 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC22.31■■□□□ 1.16
USP54Q70EL1 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC22.31■■□□□ 1.16
USP54Q70EL1 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
USP54Q70EL1 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC22.3■■□□□ 1.16
USP54Q70EL1 AC092053.1-201ENST00000605787 1936 ntBASIC22.3■■□□□ 1.16
USP54Q70EL1 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
USP54Q70EL1 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
USP54Q70EL1 RBM39-205ENST00000397370 612 ntTSL 2 BASIC22.3■■□□□ 1.16
USP54Q70EL1 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC22.3■■□□□ 1.16
USP54Q70EL1 AL079307.3-201ENST00000556114 283 ntBASIC22.3■■□□□ 1.16
USP54Q70EL1 AC140912.1-201ENST00000577171 1054 ntBASIC22.3■■□□□ 1.16
USP54Q70EL1 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
USP54Q70EL1 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC22.3■■□□□ 1.16
USP54Q70EL1 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC22.3■■□□□ 1.16
USP54Q70EL1 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC22.3■■□□□ 1.16
USP54Q70EL1 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
USP54Q70EL1 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC22.3■■□□□ 1.16
USP54Q70EL1 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
USP54Q70EL1 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
USP54Q70EL1 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
USP54Q70EL1 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
USP54Q70EL1 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
USP54Q70EL1 PIN1P1-201ENST00000412108 996 ntBASIC22.3■■□□□ 1.16
USP54Q70EL1 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC22.3■■□□□ 1.16
USP54Q70EL1 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC22.3■■□□□ 1.16
USP54Q70EL1 SPDYE18-201ENST00000510091 1050 ntBASIC22.3■■□□□ 1.16
USP54Q70EL1 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
USP54Q70EL1 AC104794.3-201ENST00000566840 1248 ntBASIC22.3■■□□□ 1.16
USP54Q70EL1 AC009407.1-201ENST00000568958 598 ntBASIC22.3■■□□□ 1.16
USP54Q70EL1 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC22.3■■□□□ 1.16
USP54Q70EL1 RN7SL828P-201ENST00000607615 303 ntBASIC22.3■■□□□ 1.16
USP54Q70EL1 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
USP54Q70EL1 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
USP54Q70EL1 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP54Q70EL1 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP54Q70EL1 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP54Q70EL1 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC22.29■■□□□ 1.16
USP54Q70EL1 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP54Q70EL1 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP54Q70EL1 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP54Q70EL1 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC22.29■■□□□ 1.16
USP54Q70EL1 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC22.29■■□□□ 1.16
USP54Q70EL1 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP54Q70EL1 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
USP54Q70EL1 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
USP54Q70EL1 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
USP54Q70EL1 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
USP54Q70EL1 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
USP54Q70EL1 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC22.29■■□□□ 1.16
USP54Q70EL1 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP54Q70EL1 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC22.29■■□□□ 1.16
USP54Q70EL1 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP54Q70EL1 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
USP54Q70EL1 PXK-206ENST00000463280 2825 ntTSL 2 BASIC22.29■■□□□ 1.16
USP54Q70EL1 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
USP54Q70EL1 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms