Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 HLA-F-220ENST00000434407 884 ntBASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 SPDYE13P-201ENST00000445314 798 ntBASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 BX276092.5-203ENST00000456199 560 ntBASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PPP4R4Q6NUP7 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 Z83836.1-201ENST00000624605 1642 ntBASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 AC011498.5-201ENST00000592027 486 ntBASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.37■□□□□ 0.21
PPP4R4Q6NUP7 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 AC132872.4-202ENST00000622924 2756 ntBASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms