Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 AC106886.4-201ENST00000623557 2502 ntBASIC20.57■□□□□ 0.88
VPS53Q5VIR6 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 AC098831.1-202ENST00000438821 336 ntBASIC20.56■□□□□ 0.88
VPS53Q5VIR6 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 IGHV3-22-201ENST00000520721 359 ntBASIC20.56■□□□□ 0.88
VPS53Q5VIR6 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS53Q5VIR6 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 AC136632.2-201ENST00000512891 861 ntBASIC20.55■□□□□ 0.88
VPS53Q5VIR6 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 RPS29-206ENST00000557111 488 ntTSL 2 BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 ETFA-208ENST00000559602 792 ntTSL 3 BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 AC084018.2-201ENST00000613093 2607 ntBASIC20.55■□□□□ 0.88
VPS53Q5VIR6 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
VPS53Q5VIR6 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 RPS2P28-201ENST00000314255 741 ntBASIC20.54■□□□□ 0.88
VPS53Q5VIR6 INIP-202ENST00000374236 874 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 RPS15P9-201ENST00000494093 319 ntBASIC20.54■□□□□ 0.88
VPS53Q5VIR6 SLC25A1P1-201ENST00000528351 927 ntBASIC20.54■□□□□ 0.88
VPS53Q5VIR6 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 NFIC-211ENST00000641145 8399 ntBASIC20.54■□□□□ 0.88
VPS53Q5VIR6 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS53Q5VIR6 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS53Q5VIR6 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms