Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC10.35□□□□□ -0.75
HSPG2P98160 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC10.35□□□□□ -0.75
HSPG2P98160 AC007551.1-201ENST00000457394 519 ntBASIC10.35□□□□□ -0.75
HSPG2P98160 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC10.35□□□□□ -0.75
HSPG2P98160 AP000812.2-201ENST00000538934 718 ntBASIC10.35□□□□□ -0.75
HSPG2P98160 MIR5572-201ENST00000583188 137 ntBASIC10.35□□□□□ -0.75
HSPG2P98160 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC10.35□□□□□ -0.75
HSPG2P98160 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
HSPG2P98160 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC10.35□□□□□ -0.75
HSPG2P98160 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC10.35□□□□□ -0.75
HSPG2P98160 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.75
HSPG2P98160 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC10.35□□□□□ -0.75
HSPG2P98160 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC10.35□□□□□ -0.75
HSPG2P98160 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC10.35□□□□□ -0.75
HSPG2P98160 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC10.35□□□□□ -0.75
HSPG2P98160 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC10.35□□□□□ -0.75
HSPG2P98160 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
HSPG2P98160 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC10.35□□□□□ -0.75
HSPG2P98160 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC10.35□□□□□ -0.75
HSPG2P98160 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC10.35□□□□□ -0.75
HSPG2P98160 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC10.35□□□□□ -0.75
HSPG2P98160 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC10.35□□□□□ -0.75
HSPG2P98160 AC138627.1-207ENST00000641560 1006 ntBASIC10.35□□□□□ -0.75
HSPG2P98160 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC10.35□□□□□ -0.75
HSPG2P98160 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC10.35□□□□□ -0.75
HSPG2P98160 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC10.35□□□□□ -0.75
HSPG2P98160 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC10.35□□□□□ -0.75
HSPG2P98160 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 LBX2-201ENST00000341396 886 ntTSL 3 BASIC10.35□□□□□ -0.75
HSPG2P98160 RBM39-205ENST00000397370 612 ntTSL 2 BASIC10.35□□□□□ -0.75
HSPG2P98160 OLR1-203ENST00000432556 950 ntTSL 2 BASIC10.35□□□□□ -0.75
HSPG2P98160 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC10.35□□□□□ -0.75
HSPG2P98160 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC10.35□□□□□ -0.75
HSPG2P98160 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC10.35□□□□□ -0.75
HSPG2P98160 HNRNPUP1-201ENST00000554987 333 ntBASIC10.35□□□□□ -0.75
HSPG2P98160 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC10.35□□□□□ -0.75
HSPG2P98160 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC10.35□□□□□ -0.75
HSPG2P98160 AL022328.1-201ENST00000610050 478 ntBASIC10.35□□□□□ -0.75
HSPG2P98160 AC005695.3-201ENST00000614522 232 ntBASIC10.35□□□□□ -0.75
HSPG2P98160 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC10.35□□□□□ -0.75
HSPG2P98160 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
HSPG2P98160 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC10.35□□□□□ -0.75
HSPG2P98160 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC10.35□□□□□ -0.75
HSPG2P98160 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC10.35□□□□□ -0.75
HSPG2P98160 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC10.35□□□□□ -0.75
HSPG2P98160 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC10.35□□□□□ -0.75
HSPG2P98160 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC10.35□□□□□ -0.75
HSPG2P98160 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC10.35□□□□□ -0.75
HSPG2P98160 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
HSPG2P98160 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC10.35□□□□□ -0.75
HSPG2P98160 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC10.34□□□□□ -0.75
HSPG2P98160 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC10.34□□□□□ -0.75
HSPG2P98160 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC10.34□□□□□ -0.75
HSPG2P98160 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC10.34□□□□□ -0.75
HSPG2P98160 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC10.34□□□□□ -0.75
HSPG2P98160 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC10.34□□□□□ -0.75
HSPG2P98160 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC10.34□□□□□ -0.75
HSPG2P98160 FADS2-212ENST00000522639 360 ntTSL 5 BASIC10.34□□□□□ -0.75
HSPG2P98160 FADS2-215ENST00000574708 385 ntTSL 3 BASIC10.34□□□□□ -0.75
HSPG2P98160 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC10.34□□□□□ -0.75
HSPG2P98160 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC10.34□□□□□ -0.75
HSPG2P98160 CROCCP3-202ENST00000420820 1947 ntBASIC10.34□□□□□ -0.75
HSPG2P98160 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
HSPG2P98160 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC10.34□□□□□ -0.75
HSPG2P98160 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC10.34□□□□□ -0.75
HSPG2P98160 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC10.34□□□□□ -0.75
HSPG2P98160 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
HSPG2P98160 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC10.34□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms