Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CCNA1P78396 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCNA1P78396 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC19.25■□□□□ 0.67
CCNA1P78396 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC19.25■□□□□ 0.67
CCNA1P78396 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CCNA1P78396 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CCNA1P78396 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.24■□□□□ 0.67
CCNA1P78396 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCNA1P78396 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.24■□□□□ 0.67
CCNA1P78396 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CCNA1P78396 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCNA1P78396 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCNA1P78396 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC19.24■□□□□ 0.67
CCNA1P78396 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC19.24■□□□□ 0.67
CCNA1P78396 AC092580.3-201ENST00000430932 139 ntBASIC19.24■□□□□ 0.67
CCNA1P78396 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CCNA1P78396 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC19.24■□□□□ 0.67
CCNA1P78396 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC19.24■□□□□ 0.67
CCNA1P78396 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCNA1P78396 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCNA1P78396 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CCNA1P78396 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCNA1P78396 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCNA1P78396 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCNA1P78396 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCNA1P78396 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CCNA1P78396 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCNA1P78396 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCNA1P78396 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CCNA1P78396 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC19.23■□□□□ 0.67
CCNA1P78396 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CCNA1P78396 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCNA1P78396 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.23■□□□□ 0.67
CCNA1P78396 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCNA1P78396 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC19.23■□□□□ 0.67
CCNA1P78396 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC19.23■□□□□ 0.67
CCNA1P78396 AC105233.2-201ENST00000523697 349 ntBASIC19.23■□□□□ 0.67
CCNA1P78396 AF228730.5-201ENST00000530288 346 ntBASIC19.23■□□□□ 0.67
CCNA1P78396 PUDP-206ENST00000540122 825 ntTSL 2 BASIC19.23■□□□□ 0.67
CCNA1P78396 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC19.23■□□□□ 0.67
CCNA1P78396 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCNA1P78396 AC073592.8-201ENST00000624126 511 ntBASIC19.23■□□□□ 0.67
CCNA1P78396 AL358472.5-202ENST00000641448 1267 ntBASIC19.23■□□□□ 0.67
CCNA1P78396 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCNA1P78396 GRAMD4P3-201ENST00000621665 1669 ntBASIC19.23■□□□□ 0.67
CCNA1P78396 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCNA1P78396 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCNA1P78396 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CCNA1P78396 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC19.23■□□□□ 0.67
CCNA1P78396 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCNA1P78396 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCNA1P78396 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCNA1P78396 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC19.22■□□□□ 0.67
CCNA1P78396 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCNA1P78396 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCNA1P78396 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCNA1P78396 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC19.22■□□□□ 0.67
CCNA1P78396 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CCNA1P78396 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCNA1P78396 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.22■□□□□ 0.67
CCNA1P78396 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCNA1P78396 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCNA1P78396 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCNA1P78396 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCNA1P78396 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCNA1P78396 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCNA1P78396 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCNA1P78396 GOLGA6L11P-201ENST00000417252 1298 ntBASIC19.22■□□□□ 0.67
CCNA1P78396 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC19.22■□□□□ 0.67
CCNA1P78396 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCNA1P78396 GAPDHP21-201ENST00000450301 1010 ntBASIC19.22■□□□□ 0.67
CCNA1P78396 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC19.22■□□□□ 0.67
CCNA1P78396 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC19.22■□□□□ 0.67
CCNA1P78396 AC018529.1-201ENST00000613063 361 ntBASIC19.22■□□□□ 0.67
CCNA1P78396 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC19.22■□□□□ 0.67
CCNA1P78396 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCNA1P78396 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CCNA1P78396 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCNA1P78396 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCNA1P78396 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCNA1P78396 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.21■□□□□ 0.67
CCNA1P78396 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCNA1P78396 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCNA1P78396 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC19.21■□□□□ 0.67
CCNA1P78396 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCNA1P78396 NARF-206ENST00000457415 1668 ntTSL 5 BASIC19.21■□□□□ 0.67
CCNA1P78396 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CCNA1P78396 OR6D1P-202ENST00000641007 5290 ntBASIC19.21■□□□□ 0.67
CCNA1P78396 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCNA1P78396 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCNA1P78396 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCNA1P78396 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC19.21■□□□□ 0.67
CCNA1P78396 KRT18P34-201ENST00000488218 1270 ntBASIC19.21■□□□□ 0.67
CCNA1P78396 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CCNA1P78396 AC027369.6-201ENST00000525520 931 ntBASIC19.21■□□□□ 0.67
CCNA1P78396 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC19.21■□□□□ 0.67
CCNA1P78396 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC19.21■□□□□ 0.67
CCNA1P78396 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CCNA1P78396 KRT8P49-201ENST00000604166 1432 ntBASIC19.21■□□□□ 0.67
CCNA1P78396 CECR7-204ENST00000609932 568 ntTSL 2 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms