Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH4P55283 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CDH4P55283 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH4P55283 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.36■□□□□ 0.37
CDH4P55283 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH4P55283 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH4P55283 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CDH4P55283 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH4P55283 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.36■□□□□ 0.37
CDH4P55283 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH4P55283 MCCD1P2-201ENST00000423228 335 ntBASIC17.36■□□□□ 0.37
CDH4P55283 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.36■□□□□ 0.37
CDH4P55283 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDH4P55283 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.36■□□□□ 0.37
CDH4P55283 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.36■□□□□ 0.37
CDH4P55283 MPDU1-223ENST00000582151 728 ntBASIC17.36■□□□□ 0.37
CDH4P55283 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.36■□□□□ 0.37
CDH4P55283 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC17.36■□□□□ 0.37
CDH4P55283 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.36■□□□□ 0.37
CDH4P55283 MTDHP5-201ENST00000598980 586 ntBASIC17.36■□□□□ 0.37
CDH4P55283 AC023511.2-201ENST00000618803 211 ntBASIC17.36■□□□□ 0.37
CDH4P55283 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH4P55283 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.36■□□□□ 0.37
CDH4P55283 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDH4P55283 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDH4P55283 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC17.36■□□□□ 0.37
CDH4P55283 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.36■□□□□ 0.37
CDH4P55283 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.36■□□□□ 0.37
CDH4P55283 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.36■□□□□ 0.37
CDH4P55283 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDH4P55283 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.35■□□□□ 0.37
CDH4P55283 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CDH4P55283 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.35■□□□□ 0.37
CDH4P55283 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDH4P55283 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH4P55283 AC060834.1-201ENST00000443027 2032 ntBASIC17.35■□□□□ 0.37
CDH4P55283 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH4P55283 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDH4P55283 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH4P55283 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDH4P55283 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CDH4P55283 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDH4P55283 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH4P55283 YBX2P1-201ENST00000394192 760 ntBASIC17.35■□□□□ 0.37
CDH4P55283 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.35■□□□□ 0.37
CDH4P55283 HCG4-201ENST00000418983 998 ntBASIC17.35■□□□□ 0.37
CDH4P55283 DNAJB3-201ENST00000446806 729 ntBASIC17.35■□□□□ 0.37
CDH4P55283 AC074386.1-202ENST00000463561 864 ntBASIC17.35■□□□□ 0.37
CDH4P55283 AL031432.2-201ENST00000566714 459 ntBASIC17.35■□□□□ 0.37
CDH4P55283 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.35■□□□□ 0.37
CDH4P55283 AL928711.1-201ENST00000570165 459 ntBASIC17.35■□□□□ 0.37
CDH4P55283 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.35■□□□□ 0.37
CDH4P55283 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.35■□□□□ 0.37
CDH4P55283 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH4P55283 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CDH4P55283 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH4P55283 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
CDH4P55283 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
CDH4P55283 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDH4P55283 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDH4P55283 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDH4P55283 AL121761.2-201ENST00000598007 1648 ntBASIC17.35■□□□□ 0.37
CDH4P55283 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH4P55283 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.35■□□□□ 0.37
CDH4P55283 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDH4P55283 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH4P55283 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CDH4P55283 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CDH4P55283 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDH4P55283 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.35■□□□□ 0.37
CDH4P55283 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CDH4P55283 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH4P55283 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH4P55283 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH4P55283 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH4P55283 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH4P55283 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH4P55283 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CDH4P55283 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH4P55283 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.34■□□□□ 0.37
CDH4P55283 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CDH4P55283 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CDH4P55283 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.34■□□□□ 0.37
CDH4P55283 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH4P55283 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.34■□□□□ 0.37
CDH4P55283 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
CDH4P55283 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.34■□□□□ 0.37
CDH4P55283 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.34■□□□□ 0.37
CDH4P55283 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.34■□□□□ 0.37
CDH4P55283 AC092865.5-201ENST00000545435 363 ntBASIC17.34■□□□□ 0.37
CDH4P55283 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.34■□□□□ 0.37
CDH4P55283 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.34■□□□□ 0.37
CDH4P55283 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.34■□□□□ 0.37
CDH4P55283 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.34■□□□□ 0.37
CDH4P55283 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.34■□□□□ 0.37
CDH4P55283 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH4P55283 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH4P55283 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH4P55283 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CDH4P55283 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms