Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
HMGCS2P54868 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC19.51■□□□□ 0.71
HMGCS2P54868 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
HMGCS2P54868 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGCS2P54868 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGCS2P54868 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC19.51■□□□□ 0.71
HMGCS2P54868 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC19.51■□□□□ 0.71
HMGCS2P54868 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC19.51■□□□□ 0.71
HMGCS2P54868 CCDC74BP1-201ENST00000508880 1123 ntBASIC19.51■□□□□ 0.71
HMGCS2P54868 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC19.51■□□□□ 0.71
HMGCS2P54868 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC19.51■□□□□ 0.71
HMGCS2P54868 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
HMGCS2P54868 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.51■□□□□ 0.71
HMGCS2P54868 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.51■□□□□ 0.71
HMGCS2P54868 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HMGCS2P54868 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGCS2P54868 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.51■□□□□ 0.71
HMGCS2P54868 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HMGCS2P54868 LINC00896-202ENST00000609602 2128 ntBASIC19.51■□□□□ 0.71
HMGCS2P54868 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGCS2P54868 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HMGCS2P54868 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC19.51■□□□□ 0.71
HMGCS2P54868 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
HMGCS2P54868 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGCS2P54868 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGCS2P54868 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.5■□□□□ 0.71
HMGCS2P54868 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGCS2P54868 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGCS2P54868 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HMGCS2P54868 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGCS2P54868 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGCS2P54868 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
HMGCS2P54868 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.5■□□□□ 0.71
HMGCS2P54868 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HMGCS2P54868 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HMGCS2P54868 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
HMGCS2P54868 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
HMGCS2P54868 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC19.5■□□□□ 0.71
HMGCS2P54868 CDK2AP2P3-201ENST00000422476 372 ntBASIC19.5■□□□□ 0.71
HMGCS2P54868 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC19.5■□□□□ 0.71
HMGCS2P54868 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC19.5■□□□□ 0.71
HMGCS2P54868 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC19.5■□□□□ 0.71
HMGCS2P54868 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC19.5■□□□□ 0.71
HMGCS2P54868 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC19.5■□□□□ 0.71
HMGCS2P54868 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC19.5■□□□□ 0.71
HMGCS2P54868 CYP2A7P1-201ENST00000595391 815 ntBASIC19.5■□□□□ 0.71
HMGCS2P54868 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC19.5■□□□□ 0.71
HMGCS2P54868 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
HMGCS2P54868 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.5■□□□□ 0.71
HMGCS2P54868 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC19.5■□□□□ 0.71
HMGCS2P54868 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC19.5■□□□□ 0.71
HMGCS2P54868 FRMD8P1-201ENST00000440433 1524 ntBASIC19.5■□□□□ 0.71
HMGCS2P54868 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC19.5■□□□□ 0.71
HMGCS2P54868 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HMGCS2P54868 AC016396.2-201ENST00000562575 1417 ntBASIC19.5■□□□□ 0.71
HMGCS2P54868 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
HMGCS2P54868 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
HMGCS2P54868 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC19.49■□□□□ 0.71
HMGCS2P54868 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 METTL26-204ENST00000397665 558 ntTSL 2 BASIC19.49■□□□□ 0.71
HMGCS2P54868 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC19.49■□□□□ 0.71
HMGCS2P54868 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC19.49■□□□□ 0.71
HMGCS2P54868 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
HMGCS2P54868 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
HMGCS2P54868 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC19.49■□□□□ 0.71
HMGCS2P54868 AC005225.4-201ENST00000557330 545 ntBASIC19.49■□□□□ 0.71
HMGCS2P54868 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC19.49■□□□□ 0.71
HMGCS2P54868 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
HMGCS2P54868 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
HMGCS2P54868 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGCS2P54868 KRT8P49-201ENST00000604166 1432 ntBASIC19.49■□□□□ 0.71
HMGCS2P54868 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.49■□□□□ 0.71
HMGCS2P54868 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
HMGCS2P54868 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGCS2P54868 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HMGCS2P54868 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGCS2P54868 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.48■□□□□ 0.71
HMGCS2P54868 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.48■□□□□ 0.71
HMGCS2P54868 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGCS2P54868 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGCS2P54868 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms