Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.99■□□□□ 0.47
COL4A4P53420 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC17.99■□□□□ 0.47
COL4A4P53420 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC17.99■□□□□ 0.47
COL4A4P53420 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17.99■□□□□ 0.47
COL4A4P53420 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A4P53420 AC008738.7-201ENST00000609744 511 ntBASIC17.99■□□□□ 0.47
COL4A4P53420 AC139713.2-201ENST00000641328 2723 ntBASIC17.99■□□□□ 0.47
COL4A4P53420 AC012569.1-201ENST00000591191 1524 ntBASIC17.98■□□□□ 0.47
COL4A4P53420 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
COL4A4P53420 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A4P53420 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
COL4A4P53420 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
COL4A4P53420 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.98■□□□□ 0.47
COL4A4P53420 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A4P53420 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A4P53420 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A4P53420 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.98■□□□□ 0.47
COL4A4P53420 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.98■□□□□ 0.47
COL4A4P53420 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC17.98■□□□□ 0.47
COL4A4P53420 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
COL4A4P53420 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A4P53420 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A4P53420 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
COL4A4P53420 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A4P53420 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC17.98■□□□□ 0.47
COL4A4P53420 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.98■□□□□ 0.47
COL4A4P53420 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.98■□□□□ 0.47
COL4A4P53420 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A4P53420 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
COL4A4P53420 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.98■□□□□ 0.47
COL4A4P53420 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A4P53420 FOXO1B-201ENST00000504678 1527 ntBASIC17.98■□□□□ 0.47
COL4A4P53420 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A4P53420 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
COL4A4P53420 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
COL4A4P53420 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A4P53420 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A4P53420 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A4P53420 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.97■□□□□ 0.47
COL4A4P53420 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.97■□□□□ 0.47
COL4A4P53420 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A4P53420 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A4P53420 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.97■□□□□ 0.47
COL4A4P53420 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.97■□□□□ 0.47
COL4A4P53420 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
COL4A4P53420 REEP4-207ENST00000523293 913 ntTSL 3 BASIC17.97■□□□□ 0.47
COL4A4P53420 AL844908.2-201ENST00000609461 460 ntBASIC17.97■□□□□ 0.47
COL4A4P53420 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.97■□□□□ 0.47
COL4A4P53420 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A4P53420 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
COL4A4P53420 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
COL4A4P53420 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A4P53420 PCDHB18P-201ENST00000524813 2368 ntBASIC17.97■□□□□ 0.47
COL4A4P53420 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.97■□□□□ 0.47
COL4A4P53420 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
COL4A4P53420 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
COL4A4P53420 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.97■□□□□ 0.47
COL4A4P53420 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A4P53420 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A4P53420 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A4P53420 AC141586.5-201ENST00000624546 2050 ntBASIC17.97■□□□□ 0.47
COL4A4P53420 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.96■□□□□ 0.47
COL4A4P53420 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A4P53420 AC093525.9-201ENST00000624961 1746 ntBASIC17.96■□□□□ 0.47
COL4A4P53420 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A4P53420 AC142381.1-201ENST00000426099 345 ntBASIC17.96■□□□□ 0.47
COL4A4P53420 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.96■□□□□ 0.47
COL4A4P53420 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
COL4A4P53420 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC17.96■□□□□ 0.47
COL4A4P53420 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
COL4A4P53420 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.96■□□□□ 0.47
COL4A4P53420 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.96■□□□□ 0.47
COL4A4P53420 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC17.96■□□□□ 0.47
COL4A4P53420 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
COL4A4P53420 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.96■□□□□ 0.47
COL4A4P53420 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A4P53420 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.47
COL4A4P53420 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A4P53420 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
COL4A4P53420 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A4P53420 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A4P53420 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A4P53420 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A4P53420 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A4P53420 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.96■□□□□ 0.47
COL4A4P53420 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC17.96■□□□□ 0.47
COL4A4P53420 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A4P53420 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.96■□□□□ 0.47
COL4A4P53420 API5-211ENST00000534695 560 ntTSL 5 BASIC17.96■□□□□ 0.47
COL4A4P53420 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC17.96■□□□□ 0.47
COL4A4P53420 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A4P53420 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL4A4P53420 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.46
COL4A4P53420 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
COL4A4P53420 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
COL4A4P53420 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A4P53420 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
COL4A4P53420 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL4A4P53420 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.95■□□□□ 0.46
COL4A4P53420 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms