Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC19.91■□□□□ 0.78
MRE11P49959 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MRE11P49959 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MRE11P49959 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MRE11P49959 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC19.91■□□□□ 0.78
MRE11P49959 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MRE11P49959 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MRE11P49959 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
MRE11P49959 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MRE11P49959 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
MRE11P49959 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC19.9■□□□□ 0.78
MRE11P49959 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
MRE11P49959 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MRE11P49959 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MRE11P49959 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MRE11P49959 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MRE11P49959 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.9■□□□□ 0.78
MRE11P49959 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.9■□□□□ 0.78
MRE11P49959 AC004980.1-204ENST00000429707 299 ntBASIC19.9■□□□□ 0.78
MRE11P49959 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.9■□□□□ 0.78
MRE11P49959 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.9■□□□□ 0.78
MRE11P49959 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
MRE11P49959 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MRE11P49959 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MRE11P49959 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MRE11P49959 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
MRE11P49959 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC19.9■□□□□ 0.78
MRE11P49959 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MRE11P49959 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MRE11P49959 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.9■□□□□ 0.78
MRE11P49959 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MRE11P49959 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC19.9■□□□□ 0.78
MRE11P49959 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC19.9■□□□□ 0.78
MRE11P49959 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MRE11P49959 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MRE11P49959 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
MRE11P49959 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
MRE11P49959 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MRE11P49959 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
MRE11P49959 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
MRE11P49959 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
MRE11P49959 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
MRE11P49959 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.78
MRE11P49959 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.78
MRE11P49959 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
MRE11P49959 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MRE11P49959 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
MRE11P49959 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC19.89■□□□□ 0.77
MRE11P49959 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MRE11P49959 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
MRE11P49959 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MRE11P49959 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
MRE11P49959 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
MRE11P49959 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
MRE11P49959 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MRE11P49959 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.89■□□□□ 0.77
MRE11P49959 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MRE11P49959 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
MRE11P49959 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.89■□□□□ 0.77
MRE11P49959 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC19.89■□□□□ 0.77
MRE11P49959 AL136038.3-201ENST00000561909 1096 ntBASIC19.89■□□□□ 0.77
MRE11P49959 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
MRE11P49959 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC19.89■□□□□ 0.77
MRE11P49959 AL031985.4-201ENST00000642138 673 ntBASIC19.89■□□□□ 0.77
MRE11P49959 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
MRE11P49959 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MRE11P49959 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
MRE11P49959 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
MRE11P49959 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MRE11P49959 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
MRE11P49959 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.88■□□□□ 0.77
MRE11P49959 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MRE11P49959 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
MRE11P49959 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
MRE11P49959 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
MRE11P49959 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
MRE11P49959 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
MRE11P49959 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC19.88■□□□□ 0.77
MRE11P49959 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC19.88■□□□□ 0.77
MRE11P49959 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
MRE11P49959 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MRE11P49959 SLC25A1P3-201ENST00000395415 828 ntBASIC19.88■□□□□ 0.77
MRE11P49959 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
MRE11P49959 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.88■□□□□ 0.77
MRE11P49959 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC19.88■□□□□ 0.77
MRE11P49959 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.88■□□□□ 0.77
MRE11P49959 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
MRE11P49959 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.88■□□□□ 0.77
MRE11P49959 AL671883.3-201ENST00000603274 991 ntBASIC19.88■□□□□ 0.77
MRE11P49959 AL031432.5-201ENST00000641059 760 ntBASIC19.88■□□□□ 0.77
MRE11P49959 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
MRE11P49959 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MRE11P49959 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
MRE11P49959 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.88■□□□□ 0.77
MRE11P49959 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC19.88■□□□□ 0.77
MRE11P49959 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MRE11P49959 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
MRE11P49959 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.88■□□□□ 0.77
MRE11P49959 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MRE11P49959 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms