Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIG3P49916 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIG3P49916 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.97■□□□□ 0.47
LIG3P49916 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIG3P49916 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.97■□□□□ 0.47
LIG3P49916 TSPY19P-201ENST00000418461 509 ntBASIC17.97■□□□□ 0.47
LIG3P49916 TSPY18P-201ENST00000441642 509 ntBASIC17.97■□□□□ 0.47
LIG3P49916 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.97■□□□□ 0.47
LIG3P49916 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.97■□□□□ 0.47
LIG3P49916 AC112698.1-201ENST00000510299 916 ntBASIC17.97■□□□□ 0.47
LIG3P49916 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.97■□□□□ 0.47
LIG3P49916 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.97■□□□□ 0.47
LIG3P49916 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.97■□□□□ 0.47
LIG3P49916 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIG3P49916 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIG3P49916 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIG3P49916 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIG3P49916 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.97■□□□□ 0.47
LIG3P49916 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.97■□□□□ 0.47
LIG3P49916 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.97■□□□□ 0.47
LIG3P49916 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIG3P49916 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIG3P49916 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
LIG3P49916 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIG3P49916 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIG3P49916 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIG3P49916 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.97■□□□□ 0.47
LIG3P49916 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
LIG3P49916 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIG3P49916 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIG3P49916 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.96■□□□□ 0.47
LIG3P49916 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIG3P49916 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LIG3P49916 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.47
LIG3P49916 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC17.96■□□□□ 0.47
LIG3P49916 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIG3P49916 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIG3P49916 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LIG3P49916 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.96■□□□□ 0.47
LIG3P49916 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.96■□□□□ 0.47
LIG3P49916 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.96■□□□□ 0.47
LIG3P49916 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LIG3P49916 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.96■□□□□ 0.47
LIG3P49916 AL732292.2-201ENST00000609649 430 ntBASIC17.96■□□□□ 0.47
LIG3P49916 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.96■□□□□ 0.47
LIG3P49916 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.96■□□□□ 0.47
LIG3P49916 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.96■□□□□ 0.47
LIG3P49916 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LIG3P49916 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.96■□□□□ 0.47
LIG3P49916 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIG3P49916 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIG3P49916 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
LIG3P49916 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.96■□□□□ 0.47
LIG3P49916 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIG3P49916 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC17.96■□□□□ 0.47
LIG3P49916 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIG3P49916 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
LIG3P49916 AL138688.1-201ENST00000624851 1594 ntBASIC17.96■□□□□ 0.46
LIG3P49916 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
LIG3P49916 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIG3P49916 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.95■□□□□ 0.46
LIG3P49916 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LIG3P49916 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
LIG3P49916 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.95■□□□□ 0.46
LIG3P49916 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIG3P49916 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LIG3P49916 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIG3P49916 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
LIG3P49916 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LIG3P49916 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
LIG3P49916 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LIG3P49916 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
LIG3P49916 AC105917.1-201ENST00000506637 2539 ntBASIC17.95■□□□□ 0.46
LIG3P49916 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LIG3P49916 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIG3P49916 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIG3P49916 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
LIG3P49916 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.95■□□□□ 0.46
LIG3P49916 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIG3P49916 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.95■□□□□ 0.46
LIG3P49916 KRT18P31-201ENST00000506277 1292 ntBASIC17.95■□□□□ 0.46
LIG3P49916 UNC93B7-201ENST00000509439 705 ntBASIC17.95■□□□□ 0.46
LIG3P49916 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.95■□□□□ 0.46
LIG3P49916 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.95■□□□□ 0.46
LIG3P49916 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.95■□□□□ 0.46
LIG3P49916 AC091304.2-201ENST00000564639 760 ntBASIC17.95■□□□□ 0.46
LIG3P49916 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.95■□□□□ 0.46
LIG3P49916 AC005336.2-201ENST00000593183 939 ntBASIC17.95■□□□□ 0.46
LIG3P49916 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIG3P49916 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIG3P49916 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
LIG3P49916 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIG3P49916 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LIG3P49916 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIG3P49916 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIG3P49916 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.95■□□□□ 0.46
LIG3P49916 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIG3P49916 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.95■□□□□ 0.46
LIG3P49916 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.95■□□□□ 0.46
LIG3P49916 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms