Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RORAP35398 AC106820.2-201ENST00000563775 3264 ntBASIC16.17■□□□□ 0.18
RORAP35398 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.17■□□□□ 0.18
RORAP35398 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RORAP35398 AC129492.6-201ENST00000611383 1305 ntBASIC16.17■□□□□ 0.18
RORAP35398 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
RORAP35398 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
RORAP35398 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
RORAP35398 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.16■□□□□ 0.18
RORAP35398 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RORAP35398 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RORAP35398 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
RORAP35398 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RORAP35398 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.16■□□□□ 0.18
RORAP35398 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RORAP35398 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.16■□□□□ 0.18
RORAP35398 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RORAP35398 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RORAP35398 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.16■□□□□ 0.18
RORAP35398 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RORAP35398 AC254562.1-201ENST00000417586 456 ntBASIC16.16■□□□□ 0.18
RORAP35398 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.16■□□□□ 0.18
RORAP35398 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.16■□□□□ 0.18
RORAP35398 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
RORAP35398 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RORAP35398 AL031432.2-201ENST00000566714 459 ntBASIC16.16■□□□□ 0.18
RORAP35398 AL928711.1-201ENST00000570165 459 ntBASIC16.16■□□□□ 0.18
RORAP35398 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.16■□□□□ 0.18
RORAP35398 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.16■□□□□ 0.18
RORAP35398 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RORAP35398 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RORAP35398 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RORAP35398 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RORAP35398 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
RORAP35398 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RORAP35398 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RORAP35398 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
RORAP35398 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
RORAP35398 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RORAP35398 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
RORAP35398 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.16■□□□□ 0.18
RORAP35398 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.16■□□□□ 0.18
RORAP35398 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RORAP35398 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RORAP35398 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RORAP35398 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RORAP35398 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
RORAP35398 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
RORAP35398 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RORAP35398 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.15■□□□□ 0.18
RORAP35398 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RORAP35398 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
RORAP35398 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RORAP35398 PMS2P2-201ENST00000425039 1128 ntBASIC16.15■□□□□ 0.18
RORAP35398 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.15■□□□□ 0.18
RORAP35398 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
RORAP35398 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.15■□□□□ 0.18
RORAP35398 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.15■□□□□ 0.18
RORAP35398 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.15■□□□□ 0.18
RORAP35398 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RORAP35398 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.15■□□□□ 0.18
RORAP35398 AL596442.2-201ENST00000610240 980 ntBASIC16.15■□□□□ 0.18
RORAP35398 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.15■□□□□ 0.18
RORAP35398 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.15■□□□□ 0.18
RORAP35398 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
RORAP35398 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RORAP35398 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RORAP35398 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.15■□□□□ 0.18
RORAP35398 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
RORAP35398 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RORAP35398 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
RORAP35398 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.14■□□□□ 0.17
RORAP35398 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
RORAP35398 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RORAP35398 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.14■□□□□ 0.17
RORAP35398 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RORAP35398 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RORAP35398 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RORAP35398 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RORAP35398 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RORAP35398 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.14■□□□□ 0.17
RORAP35398 FAM58CP-201ENST00000435741 640 ntBASIC16.14■□□□□ 0.17
RORAP35398 ACTG1P14-201ENST00000446382 1122 ntBASIC16.14■□□□□ 0.17
RORAP35398 CEND1P1-201ENST00000451006 455 ntBASIC16.14■□□□□ 0.17
RORAP35398 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
RORAP35398 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.14■□□□□ 0.17
RORAP35398 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.14■□□□□ 0.17
RORAP35398 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.14■□□□□ 0.17
RORAP35398 AC107918.2-201ENST00000530817 355 ntBASIC16.14■□□□□ 0.17
RORAP35398 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.14■□□□□ 0.17
RORAP35398 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RORAP35398 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.14■□□□□ 0.17
RORAP35398 AC068137.2-201ENST00000605408 478 ntBASIC16.14■□□□□ 0.17
RORAP35398 AC091812.2-201ENST00000619081 385 ntBASIC16.14■□□□□ 0.17
RORAP35398 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RORAP35398 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RORAP35398 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RORAP35398 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.14■□□□□ 0.17
RORAP35398 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RORAP35398 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms