Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
SDC1P18827 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SDC1P18827 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
SDC1P18827 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SDC1P18827 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SDC1P18827 AL021920.2-201ENST00000624828 1351 ntBASIC16.23■□□□□ 0.19
SDC1P18827 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.22■□□□□ 0.19
SDC1P18827 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.22■□□□□ 0.19
SDC1P18827 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
SDC1P18827 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SDC1P18827 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 AC006449.5-201ENST00000610658 2098 ntBASIC16.22■□□□□ 0.19
SDC1P18827 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SDC1P18827 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.22■□□□□ 0.19
SDC1P18827 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
SDC1P18827 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.22■□□□□ 0.19
SDC1P18827 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.22■□□□□ 0.19
SDC1P18827 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.22■□□□□ 0.19
SDC1P18827 FOSL1P1-201ENST00000511041 816 ntBASIC16.22■□□□□ 0.19
SDC1P18827 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.22■□□□□ 0.19
SDC1P18827 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.22■□□□□ 0.19
SDC1P18827 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC16.22■□□□□ 0.19
SDC1P18827 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.22■□□□□ 0.19
SDC1P18827 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.22■□□□□ 0.19
SDC1P18827 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.22■□□□□ 0.19
SDC1P18827 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.22■□□□□ 0.19
SDC1P18827 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.22■□□□□ 0.19
SDC1P18827 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.22■□□□□ 0.19
SDC1P18827 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SDC1P18827 AC243591.1-201ENST00000452967 1364 ntBASIC16.22■□□□□ 0.19
SDC1P18827 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.22■□□□□ 0.19
SDC1P18827 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.22■□□□□ 0.19
SDC1P18827 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.22■□□□□ 0.19
SDC1P18827 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SDC1P18827 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
SDC1P18827 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDC1P18827 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.21■□□□□ 0.19
SDC1P18827 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.21■□□□□ 0.19
SDC1P18827 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
SDC1P18827 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.21■□□□□ 0.19
SDC1P18827 AL662844.4-201ENST00000606367 2838 ntBASIC16.21■□□□□ 0.19
SDC1P18827 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.21■□□□□ 0.19
SDC1P18827 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDC1P18827 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SDC1P18827 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SDC1P18827 LINC00895-201ENST00000629028 1637 ntBASIC16.21■□□□□ 0.19
SDC1P18827 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDC1P18827 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.21■□□□□ 0.19
SDC1P18827 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.21■□□□□ 0.19
SDC1P18827 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.21■□□□□ 0.19
SDC1P18827 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.21■□□□□ 0.19
SDC1P18827 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SDC1P18827 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.21■□□□□ 0.19
SDC1P18827 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.21■□□□□ 0.19
SDC1P18827 AL732292.2-201ENST00000609649 430 ntBASIC16.21■□□□□ 0.19
SDC1P18827 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.21■□□□□ 0.19
SDC1P18827 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.21■□□□□ 0.19
SDC1P18827 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.21■□□□□ 0.19
SDC1P18827 PCDH8P1-201ENST00000428983 2773 ntBASIC16.21■□□□□ 0.19
SDC1P18827 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDC1P18827 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
SDC1P18827 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.21■□□□□ 0.19
SDC1P18827 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SDC1P18827 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.21■□□□□ 0.19
SDC1P18827 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDC1P18827 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SDC1P18827 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
SDC1P18827 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
SDC1P18827 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.21■□□□□ 0.18
SDC1P18827 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.2■□□□□ 0.18
SDC1P18827 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SDC1P18827 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.2■□□□□ 0.18
SDC1P18827 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SDC1P18827 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SDC1P18827 NCF1C-201ENST00000438382 1427 ntBASIC16.2■□□□□ 0.18
SDC1P18827 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.2■□□□□ 0.18
SDC1P18827 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms