Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
CXCL1P09341 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC13.24□□□□□ -0.29
CXCL1P09341 PGR-210ENST00000619228 3038 ntTSL 5 BASIC13.24□□□□□ -0.29
CXCL1P09341 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC13.24□□□□□ -0.29
CXCL1P09341 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
CXCL1P09341 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC13.24□□□□□ -0.29
CXCL1P09341 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 SLC25A1P3-201ENST00000395415 828 ntBASIC13.24□□□□□ -0.29
CXCL1P09341 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
CXCL1P09341 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC13.24□□□□□ -0.29
CXCL1P09341 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC13.24□□□□□ -0.29
CXCL1P09341 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC13.24□□□□□ -0.29
CXCL1P09341 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC13.24□□□□□ -0.29
CXCL1P09341 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC13.24□□□□□ -0.29
CXCL1P09341 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC13.24□□□□□ -0.29
CXCL1P09341 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC13.24□□□□□ -0.29
CXCL1P09341 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC13.24□□□□□ -0.29
CXCL1P09341 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
CXCL1P09341 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC13.24□□□□□ -0.29
CXCL1P09341 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
CXCL1P09341 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC13.24□□□□□ -0.29
CXCL1P09341 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
CXCL1P09341 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC13.23□□□□□ -0.29
CXCL1P09341 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
CXCL1P09341 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC13.23□□□□□ -0.29
CXCL1P09341 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
CXCL1P09341 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
CXCL1P09341 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC13.23□□□□□ -0.29
CXCL1P09341 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC13.23□□□□□ -0.29
CXCL1P09341 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC13.23□□□□□ -0.29
CXCL1P09341 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
CXCL1P09341 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC13.23□□□□□ -0.29
CXCL1P09341 KLF13-207ENST00000560473 489 ntTSL 3 BASIC13.23□□□□□ -0.29
CXCL1P09341 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC13.23□□□□□ -0.29
CXCL1P09341 AL603832.2-201ENST00000566195 2125 ntBASIC13.23□□□□□ -0.29
CXCL1P09341 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC13.23□□□□□ -0.29
CXCL1P09341 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC13.23□□□□□ -0.29
CXCL1P09341 AC116407.2-201ENST00000613639 860 ntBASIC13.23□□□□□ -0.29
CXCL1P09341 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
CXCL1P09341 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC13.23□□□□□ -0.29
CXCL1P09341 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.23□□□□□ -0.29
CXCL1P09341 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.23□□□□□ -0.29
CXCL1P09341 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
CXCL1P09341 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
CXCL1P09341 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CXCL1P09341 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
CXCL1P09341 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
CXCL1P09341 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CXCL1P09341 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC13.22□□□□□ -0.29
CXCL1P09341 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
CXCL1P09341 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC13.22□□□□□ -0.29
CXCL1P09341 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms