Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TNFP01375 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
TNFP01375 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TNFP01375 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TNFP01375 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
TNFP01375 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.56■□□□□ 0.24
TNFP01375 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TNFP01375 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.56■□□□□ 0.24
TNFP01375 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
TNFP01375 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TNFP01375 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.56■□□□□ 0.24
TNFP01375 KRT8P49-201ENST00000604166 1432 ntBASIC16.56■□□□□ 0.24
TNFP01375 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.56■□□□□ 0.24
TNFP01375 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TNFP01375 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TNFP01375 AC068880.1-201ENST00000507289 2297 ntBASIC16.56■□□□□ 0.24
TNFP01375 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TNFP01375 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
TNFP01375 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.56■□□□□ 0.24
TNFP01375 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.56■□□□□ 0.24
TNFP01375 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TNFP01375 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TNFP01375 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.56■□□□□ 0.24
TNFP01375 TSEN15P1-201ENST00000423257 515 ntBASIC16.56■□□□□ 0.24
TNFP01375 AL645939.2-201ENST00000427340 991 ntBASIC16.56■□□□□ 0.24
TNFP01375 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.56■□□□□ 0.24
TNFP01375 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.56■□□□□ 0.24
TNFP01375 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.56■□□□□ 0.24
TNFP01375 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.56■□□□□ 0.24
TNFP01375 AC087641.1-201ENST00000557561 1021 ntBASIC16.56■□□□□ 0.24
TNFP01375 AC004449.1-201ENST00000564240 433 ntBASIC16.56■□□□□ 0.24
TNFP01375 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.56■□□□□ 0.24
TNFP01375 AL009183.1-201ENST00000603760 355 ntBASIC16.56■□□□□ 0.24
TNFP01375 AC027612.4-201ENST00000605371 583 ntBASIC16.56■□□□□ 0.24
TNFP01375 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
TNFP01375 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
TNFP01375 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TNFP01375 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TNFP01375 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
TNFP01375 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
TNFP01375 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TNFP01375 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TNFP01375 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TNFP01375 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.56■□□□□ 0.24
TNFP01375 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.56■□□□□ 0.24
TNFP01375 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.56■□□□□ 0.24
TNFP01375 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
TNFP01375 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.55■□□□□ 0.24
TNFP01375 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.55■□□□□ 0.24
TNFP01375 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.55■□□□□ 0.24
TNFP01375 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
TNFP01375 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.55■□□□□ 0.24
TNFP01375 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.55■□□□□ 0.24
TNFP01375 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.55■□□□□ 0.24
TNFP01375 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 ADH5P3-201ENST00000433842 1137 ntBASIC16.55■□□□□ 0.24
TNFP01375 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.55■□□□□ 0.24
TNFP01375 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
TNFP01375 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.55■□□□□ 0.24
TNFP01375 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.55■□□□□ 0.24
TNFP01375 RARRES2P8-201ENST00000566335 367 ntBASIC16.55■□□□□ 0.24
TNFP01375 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
TNFP01375 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.55■□□□□ 0.24
TNFP01375 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
TNFP01375 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
TNFP01375 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
TNFP01375 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TNFP01375 CROCCP2-202ENST00000412962 2773 ntBASIC16.55■□□□□ 0.24
TNFP01375 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TNFP01375 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TNFP01375 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TNFP01375 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TNFP01375 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.54■□□□□ 0.24
TNFP01375 AKAP8P1-201ENST00000434743 1349 ntBASIC16.54■□□□□ 0.24
TNFP01375 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.54■□□□□ 0.24
TNFP01375 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.54■□□□□ 0.24
TNFP01375 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TNFP01375 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TNFP01375 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
TNFP01375 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TNFP01375 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TNFP01375 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms