Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SIX3O95343 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SIX3O95343 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SIX3O95343 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.67■□□□□ 0.26
SIX3O95343 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SIX3O95343 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SIX3O95343 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SIX3O95343 ARMC10P1-201ENST00000313754 855 ntBASIC16.67■□□□□ 0.26
SIX3O95343 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
SIX3O95343 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SIX3O95343 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.67■□□□□ 0.26
SIX3O95343 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SIX3O95343 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
SIX3O95343 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SIX3O95343 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.67■□□□□ 0.26
SIX3O95343 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.67■□□□□ 0.26
SIX3O95343 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.67■□□□□ 0.26
SIX3O95343 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.67■□□□□ 0.26
SIX3O95343 DUX4L17-201ENST00000557360 1267 ntBASIC16.67■□□□□ 0.26
SIX3O95343 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.67■□□□□ 0.26
SIX3O95343 AL591684.3-201ENST00000605187 298 ntBASIC16.67■□□□□ 0.26
SIX3O95343 AP001269.4-201ENST00000609611 512 ntBASIC16.67■□□□□ 0.26
SIX3O95343 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SIX3O95343 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SIX3O95343 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SIX3O95343 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SIX3O95343 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.67■□□□□ 0.26
SIX3O95343 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SIX3O95343 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SIX3O95343 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SIX3O95343 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.67■□□□□ 0.26
SIX3O95343 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SIX3O95343 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX3O95343 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX3O95343 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
SIX3O95343 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
SIX3O95343 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
SIX3O95343 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX3O95343 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
SIX3O95343 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX3O95343 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.66■□□□□ 0.26
SIX3O95343 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.66■□□□□ 0.26
SIX3O95343 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.66■□□□□ 0.26
SIX3O95343 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX3O95343 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX3O95343 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
SIX3O95343 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SIX3O95343 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SIX3O95343 HLA-A-202ENST00000376806 1854 ntBASIC16.66■□□□□ 0.26
SIX3O95343 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SIX3O95343 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SIX3O95343 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SIX3O95343 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SIX3O95343 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.66■□□□□ 0.26
SIX3O95343 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.66■□□□□ 0.26
SIX3O95343 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SIX3O95343 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.66■□□□□ 0.26
SIX3O95343 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
SIX3O95343 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.66■□□□□ 0.26
SIX3O95343 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.66■□□□□ 0.26
SIX3O95343 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SIX3O95343 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SIX3O95343 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SIX3O95343 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX3O95343 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.66■□□□□ 0.26
SIX3O95343 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SIX3O95343 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX3O95343 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.65■□□□□ 0.26
SIX3O95343 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX3O95343 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
SIX3O95343 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
SIX3O95343 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
SIX3O95343 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SIX3O95343 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX3O95343 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.65■□□□□ 0.26
SIX3O95343 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.65■□□□□ 0.26
SIX3O95343 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SIX3O95343 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SIX3O95343 AP005117.1-201ENST00000584346 1413 ntBASIC16.65■□□□□ 0.26
SIX3O95343 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.65■□□□□ 0.26
SIX3O95343 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.65■□□□□ 0.26
SIX3O95343 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.65■□□□□ 0.26
SIX3O95343 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX3O95343 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
SIX3O95343 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SIX3O95343 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SIX3O95343 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SIX3O95343 AC132008.2-207ENST00000454517 770 ntBASIC16.65■□□□□ 0.26
SIX3O95343 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.65■□□□□ 0.26
SIX3O95343 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
SIX3O95343 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
SIX3O95343 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.65■□□□□ 0.26
SIX3O95343 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.65■□□□□ 0.26
SIX3O95343 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.65■□□□□ 0.26
SIX3O95343 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.65■□□□□ 0.26
SIX3O95343 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.65■□□□□ 0.26
SIX3O95343 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SIX3O95343 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX3O95343 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX3O95343 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms