Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC21.2■□□□□ 0.98
CACNA1FO60840 MIR4469-201ENST00000583919 79 ntBASIC21.2■□□□□ 0.98
CACNA1FO60840 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC21.2■□□□□ 0.98
CACNA1FO60840 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC21.2■□□□□ 0.98
CACNA1FO60840 AC021097.1-201ENST00000607902 574 ntBASIC21.2■□□□□ 0.98
CACNA1FO60840 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CACNA1FO60840 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
CACNA1FO60840 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CACNA1FO60840 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CACNA1FO60840 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CACNA1FO60840 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC21.2■□□□□ 0.98
CACNA1FO60840 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CACNA1FO60840 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC21.2■□□□□ 0.98
CACNA1FO60840 AC026471.1-201ENST00000564629 3026 ntBASIC21.2■□□□□ 0.98
CACNA1FO60840 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CACNA1FO60840 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CACNA1FO60840 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CACNA1FO60840 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CACNA1FO60840 AC016027.1-202ENST00000607927 1699 ntBASIC21.19■□□□□ 0.98
CACNA1FO60840 KRT18P34-201ENST00000488218 1270 ntBASIC21.19■□□□□ 0.98
CACNA1FO60840 GPAA1P2-202ENST00000606848 1787 ntBASIC21.19■□□□□ 0.98
CACNA1FO60840 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC21.19■□□□□ 0.98
CACNA1FO60840 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CACNA1FO60840 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
CACNA1FO60840 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CACNA1FO60840 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC21.19■□□□□ 0.98
CACNA1FO60840 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC21.19■□□□□ 0.98
CACNA1FO60840 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC21.19■□□□□ 0.98
CACNA1FO60840 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC21.19■□□□□ 0.98
CACNA1FO60840 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CACNA1FO60840 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CACNA1FO60840 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CACNA1FO60840 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CACNA1FO60840 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC21.19■□□□□ 0.98
CACNA1FO60840 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC21.19■□□□□ 0.98
CACNA1FO60840 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC21.19■□□□□ 0.98
CACNA1FO60840 FAM86C2P-203ENST00000528684 1004 ntBASIC21.19■□□□□ 0.98
CACNA1FO60840 AC105339.1-204ENST00000636249 355 ntBASIC21.19■□□□□ 0.98
CACNA1FO60840 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CACNA1FO60840 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
CACNA1FO60840 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CACNA1FO60840 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CACNA1FO60840 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC21.19■□□□□ 0.98
CACNA1FO60840 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC21.19■□□□□ 0.98
CACNA1FO60840 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CACNA1FO60840 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CACNA1FO60840 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CACNA1FO60840 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC21.18■□□□□ 0.98
CACNA1FO60840 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC21.18■□□□□ 0.98
CACNA1FO60840 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CACNA1FO60840 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC21.18■□□□□ 0.98
CACNA1FO60840 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CACNA1FO60840 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC21.18■□□□□ 0.98
CACNA1FO60840 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC21.18■□□□□ 0.98
CACNA1FO60840 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CACNA1FO60840 AC026120.1-201ENST00000611536 926 ntBASIC21.18■□□□□ 0.98
CACNA1FO60840 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CACNA1FO60840 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC21.18■□□□□ 0.98
CACNA1FO60840 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CACNA1FO60840 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC21.18■□□□□ 0.98
CACNA1FO60840 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CACNA1FO60840 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CACNA1FO60840 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CACNA1FO60840 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
CACNA1FO60840 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC21.18■□□□□ 0.98
CACNA1FO60840 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CACNA1FO60840 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC21.18■□□□□ 0.98
CACNA1FO60840 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CACNA1FO60840 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CACNA1FO60840 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CACNA1FO60840 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
CACNA1FO60840 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1FO60840 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1FO60840 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC21.17■□□□□ 0.98
CACNA1FO60840 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CACNA1FO60840 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1FO60840 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC21.17■□□□□ 0.98
CACNA1FO60840 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC21.17■□□□□ 0.98
CACNA1FO60840 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC21.17■□□□□ 0.98
CACNA1FO60840 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC21.17■□□□□ 0.98
CACNA1FO60840 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC21.17■□□□□ 0.98
CACNA1FO60840 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC21.17■□□□□ 0.98
CACNA1FO60840 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1FO60840 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1FO60840 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC21.17■□□□□ 0.98
CACNA1FO60840 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1FO60840 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1FO60840 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1FO60840 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1FO60840 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1FO60840 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC21.17■□□□□ 0.98
CACNA1FO60840 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1FO60840 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CACNA1FO60840 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CACNA1FO60840 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CACNA1FO60840 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC21.17■□□□□ 0.98
CACNA1FO60840 METTL21AP1-201ENST00000438852 635 ntBASIC21.17■□□□□ 0.98
CACNA1FO60840 AC069335.1-201ENST00000489972 472 ntBASIC21.17■□□□□ 0.98
CACNA1FO60840 NMU-203ENST00000507338 658 ntTSL 3 BASIC21.17■□□□□ 0.98
CACNA1FO60840 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms