Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC21.41■■□□□ 1.02
NPHP1O15259 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
NPHP1O15259 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC21.41■■□□□ 1.02
NPHP1O15259 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP1O15259 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP1O15259 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
NPHP1O15259 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
NPHP1O15259 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC21.41■■□□□ 1.02
NPHP1O15259 AC107890.1-201ENST00000422478 521 ntBASIC21.41■■□□□ 1.02
NPHP1O15259 AC005034.1-201ENST00000426657 489 ntBASIC21.41■■□□□ 1.02
NPHP1O15259 AC055876.3-201ENST00000431496 288 ntBASIC21.41■■□□□ 1.02
NPHP1O15259 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC21.41■■□□□ 1.02
NPHP1O15259 TERF1P3-201ENST00000505638 1227 ntBASIC21.41■■□□□ 1.02
NPHP1O15259 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
NPHP1O15259 NAA60-208ENST00000570819 833 ntTSL 2 BASIC21.41■■□□□ 1.02
NPHP1O15259 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC21.41■■□□□ 1.02
NPHP1O15259 MIR4515-201ENST00000584082 81 ntBASIC21.41■■□□□ 1.02
NPHP1O15259 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC21.41■■□□□ 1.02
NPHP1O15259 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP1O15259 AC138649.4-201ENST00000612222 287 ntBASIC21.41■■□□□ 1.02
NPHP1O15259 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
NPHP1O15259 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
NPHP1O15259 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
NPHP1O15259 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
NPHP1O15259 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.41■■□□□ 1.02
NPHP1O15259 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP1O15259 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP1O15259 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP1O15259 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
NPHP1O15259 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC21.4■■□□□ 1.02
NPHP1O15259 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP1O15259 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP1O15259 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP1O15259 FAM58DP-201ENST00000428076 619 ntBASIC21.4■■□□□ 1.02
NPHP1O15259 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC21.4■■□□□ 1.02
NPHP1O15259 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
NPHP1O15259 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP1O15259 AC243562.1-201ENST00000560672 389 ntBASIC21.4■■□□□ 1.02
NPHP1O15259 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP1O15259 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP1O15259 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP1O15259 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
NPHP1O15259 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP1O15259 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP1O15259 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP1O15259 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP1O15259 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP1O15259 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP1O15259 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP1O15259 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP1O15259 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NPHP1O15259 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
NPHP1O15259 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC21.39■■□□□ 1.02
NPHP1O15259 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
NPHP1O15259 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
NPHP1O15259 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
NPHP1O15259 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC21.39■■□□□ 1.01
NPHP1O15259 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP1O15259 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP1O15259 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC21.39■■□□□ 1.01
NPHP1O15259 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
NPHP1O15259 AKAP8P1-201ENST00000434743 1349 ntBASIC21.39■■□□□ 1.01
NPHP1O15259 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP1O15259 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC21.39■■□□□ 1.01
NPHP1O15259 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP1O15259 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC21.39■■□□□ 1.01
NPHP1O15259 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC21.39■■□□□ 1.01
NPHP1O15259 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC21.39■■□□□ 1.01
NPHP1O15259 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC21.39■■□□□ 1.01
NPHP1O15259 AC107918.2-201ENST00000530817 355 ntBASIC21.39■■□□□ 1.01
NPHP1O15259 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC21.39■■□□□ 1.01
NPHP1O15259 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP1O15259 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC21.39■■□□□ 1.01
NPHP1O15259 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP1O15259 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.39■■□□□ 1.01
NPHP1O15259 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP1O15259 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP1O15259 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP1O15259 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP1O15259 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP1O15259 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC21.39■■□□□ 1.01
NPHP1O15259 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC21.39■■□□□ 1.01
NPHP1O15259 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP1O15259 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP1O15259 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC21.38■■□□□ 1.01
NPHP1O15259 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP1O15259 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC21.38■■□□□ 1.01
NPHP1O15259 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP1O15259 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP1O15259 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP1O15259 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC21.38■■□□□ 1.01
NPHP1O15259 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP1O15259 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP1O15259 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC21.38■■□□□ 1.01
NPHP1O15259 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
NPHP1O15259 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP1O15259 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP1O15259 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP1O15259 EDF1-203ENST00000371649 790 ntTSL 2 BASIC21.38■■□□□ 1.01
NPHP1O15259 AC236430.1-201ENST00000402231 743 ntBASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms