Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 AC092865.7-201ENST00000641832 219 ntBASIC12.5□□□□□ -0.41
SMKR1H3BMG3 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 AL356309.3-201ENST00000624132 1934 ntBASIC12.49□□□□□ -0.41
SMKR1H3BMG3 AL391256.1-201ENST00000443260 1855 ntBASIC12.49□□□□□ -0.41
SMKR1H3BMG3 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 AL135905.2-201ENST00000584934 1404 ntBASIC12.49□□□□□ -0.41
SMKR1H3BMG3 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 HES2-202ENST00000377836 507 ntTSL 2 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 HLA-L-209ENST00000420110 1011 ntBASIC12.49□□□□□ -0.41
SMKR1H3BMG3 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 KRT18P6-201ENST00000555540 1265 ntBASIC12.49□□□□□ -0.41
SMKR1H3BMG3 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 GCK-202ENST00000345378 2421 ntTSL 2 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SMKR1H3BMG3 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 AC092384.3-202ENST00000564646 2873 ntBASIC12.48□□□□□ -0.41
SMKR1H3BMG3 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 GAD2-202ENST00000376248 680 ntTSL 5 BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
SMKR1H3BMG3 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms