Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC19.49■□□□□ 0.71
USP28Q96RU2 AC092364.2-201ENST00000596710 2692 ntBASIC19.49■□□□□ 0.71
USP28Q96RU2 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP28Q96RU2 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.49■□□□□ 0.71
USP28Q96RU2 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC19.49■□□□□ 0.71
USP28Q96RU2 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP28Q96RU2 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP28Q96RU2 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP28Q96RU2 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.49■□□□□ 0.71
USP28Q96RU2 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP28Q96RU2 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP28Q96RU2 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.49■□□□□ 0.71
USP28Q96RU2 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
USP28Q96RU2 FOSL1P1-201ENST00000511041 816 ntBASIC19.49■□□□□ 0.71
USP28Q96RU2 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP28Q96RU2 AC064862.7-201ENST00000604520 867 ntBASIC19.49■□□□□ 0.71
USP28Q96RU2 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC19.49■□□□□ 0.71
USP28Q96RU2 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP28Q96RU2 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP28Q96RU2 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP28Q96RU2 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP28Q96RU2 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP28Q96RU2 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
USP28Q96RU2 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP28Q96RU2 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USP28Q96RU2 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP28Q96RU2 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
USP28Q96RU2 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP28Q96RU2 AC243591.1-201ENST00000452967 1364 ntBASIC19.48■□□□□ 0.71
USP28Q96RU2 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USP28Q96RU2 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.48■□□□□ 0.71
USP28Q96RU2 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP28Q96RU2 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP28Q96RU2 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP28Q96RU2 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP28Q96RU2 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.48■□□□□ 0.71
USP28Q96RU2 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.48■□□□□ 0.71
USP28Q96RU2 AC106795.1-205ENST00000512851 1056 ntBASIC19.48■□□□□ 0.71
USP28Q96RU2 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USP28Q96RU2 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.48■□□□□ 0.71
USP28Q96RU2 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.48■□□□□ 0.71
USP28Q96RU2 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.48■□□□□ 0.71
USP28Q96RU2 AL732292.2-201ENST00000609649 430 ntBASIC19.48■□□□□ 0.71
USP28Q96RU2 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
USP28Q96RU2 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP28Q96RU2 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
USP28Q96RU2 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USP28Q96RU2 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP28Q96RU2 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.48■□□□□ 0.71
USP28Q96RU2 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
USP28Q96RU2 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP28Q96RU2 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.48■□□□□ 0.71
USP28Q96RU2 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
USP28Q96RU2 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.48■□□□□ 0.71
USP28Q96RU2 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP28Q96RU2 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP28Q96RU2 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP28Q96RU2 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP28Q96RU2 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP28Q96RU2 ALOX12P2-203ENST00000570921 1945 ntBASIC19.47■□□□□ 0.71
USP28Q96RU2 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
USP28Q96RU2 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.47■□□□□ 0.71
USP28Q96RU2 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP28Q96RU2 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.47■□□□□ 0.71
USP28Q96RU2 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP28Q96RU2 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP28Q96RU2 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP28Q96RU2 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP28Q96RU2 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
USP28Q96RU2 PRYP5-201ENST00000451909 266 ntBASIC19.47■□□□□ 0.71
USP28Q96RU2 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.47■□□□□ 0.71
USP28Q96RU2 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.47■□□□□ 0.71
USP28Q96RU2 AP002490.2-201ENST00000524791 560 ntBASIC19.47■□□□□ 0.71
USP28Q96RU2 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.47■□□□□ 0.71
USP28Q96RU2 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19.47■□□□□ 0.71
USP28Q96RU2 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.47■□□□□ 0.71
USP28Q96RU2 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
USP28Q96RU2 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
USP28Q96RU2 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.47■□□□□ 0.71
USP28Q96RU2 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.47■□□□□ 0.71
USP28Q96RU2 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP28Q96RU2 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC19.47■□□□□ 0.71
USP28Q96RU2 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
USP28Q96RU2 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP28Q96RU2 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP28Q96RU2 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP28Q96RU2 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
USP28Q96RU2 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP28Q96RU2 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC19.47■□□□□ 0.71
USP28Q96RU2 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP28Q96RU2 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP28Q96RU2 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP28Q96RU2 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19.46■□□□□ 0.71
USP28Q96RU2 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP28Q96RU2 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC19.46■□□□□ 0.71
USP28Q96RU2 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC19.46■□□□□ 0.71
USP28Q96RU2 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.46■□□□□ 0.71
USP28Q96RU2 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC19.46■□□□□ 0.71
USP28Q96RU2 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP28Q96RU2 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms