Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.65■□□□□ 0.26
VRK3Q8IV63 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VRK3Q8IV63 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
VRK3Q8IV63 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
VRK3Q8IV63 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VRK3Q8IV63 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VRK3Q8IV63 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VRK3Q8IV63 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VRK3Q8IV63 IL9RP2-201ENST00000423948 1312 ntBASIC16.65■□□□□ 0.26
VRK3Q8IV63 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.65■□□□□ 0.26
VRK3Q8IV63 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.65■□□□□ 0.26
VRK3Q8IV63 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.65■□□□□ 0.26
VRK3Q8IV63 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VRK3Q8IV63 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
VRK3Q8IV63 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.64■□□□□ 0.26
VRK3Q8IV63 AGGF1P2-201ENST00000426656 2106 ntBASIC16.64■□□□□ 0.25
VRK3Q8IV63 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
VRK3Q8IV63 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
VRK3Q8IV63 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VRK3Q8IV63 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.64■□□□□ 0.25
VRK3Q8IV63 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
VRK3Q8IV63 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VRK3Q8IV63 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VRK3Q8IV63 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VRK3Q8IV63 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.64■□□□□ 0.25
VRK3Q8IV63 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VRK3Q8IV63 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.64■□□□□ 0.25
VRK3Q8IV63 SLC25A1P1-201ENST00000528351 927 ntBASIC16.64■□□□□ 0.25
VRK3Q8IV63 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.64■□□□□ 0.25
VRK3Q8IV63 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.64■□□□□ 0.25
VRK3Q8IV63 GGTLC5P-201ENST00000617623 998 ntBASIC16.64■□□□□ 0.25
VRK3Q8IV63 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VRK3Q8IV63 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.64■□□□□ 0.25
VRK3Q8IV63 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.64■□□□□ 0.25
VRK3Q8IV63 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
VRK3Q8IV63 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VRK3Q8IV63 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.64■□□□□ 0.25
VRK3Q8IV63 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VRK3Q8IV63 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
VRK3Q8IV63 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.64■□□□□ 0.25
VRK3Q8IV63 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.64■□□□□ 0.25
VRK3Q8IV63 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.64■□□□□ 0.25
VRK3Q8IV63 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.64■□□□□ 0.25
VRK3Q8IV63 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
VRK3Q8IV63 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VRK3Q8IV63 AC078925.2-201ENST00000624013 1973 ntBASIC16.64■□□□□ 0.25
VRK3Q8IV63 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
VRK3Q8IV63 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VRK3Q8IV63 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.64■□□□□ 0.25
VRK3Q8IV63 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 AL645728.1-201ENST00000366221 2101 ntBASIC16.63■□□□□ 0.25
VRK3Q8IV63 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.63■□□□□ 0.25
VRK3Q8IV63 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.63■□□□□ 0.25
VRK3Q8IV63 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.63■□□□□ 0.25
VRK3Q8IV63 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
VRK3Q8IV63 AL590627.1-203ENST00000421194 1026 ntBASIC16.63■□□□□ 0.25
VRK3Q8IV63 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.63■□□□□ 0.25
VRK3Q8IV63 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
VRK3Q8IV63 AC107918.2-201ENST00000530817 355 ntBASIC16.63■□□□□ 0.25
VRK3Q8IV63 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.63■□□□□ 0.25
VRK3Q8IV63 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.63■□□□□ 0.25
VRK3Q8IV63 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.63■□□□□ 0.25
VRK3Q8IV63 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
VRK3Q8IV63 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 FLJ38576-201ENST00000623820 2459 ntBASIC16.63■□□□□ 0.25
VRK3Q8IV63 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.63■□□□□ 0.25
VRK3Q8IV63 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.63■□□□□ 0.25
VRK3Q8IV63 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
VRK3Q8IV63 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.63■□□□□ 0.25
VRK3Q8IV63 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.63■□□□□ 0.25
VRK3Q8IV63 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VRK3Q8IV63 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VRK3Q8IV63 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
VRK3Q8IV63 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
VRK3Q8IV63 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms